Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3145 125 9e-24 seq330 82.4 9e-11 >seq3145 Length=10667 Score = 125 bits (138), Expect = 9e-24 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| || |||||||| || || |||||| || || |||||||| || Sbjct 268 GTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 209 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || ||||| ||||||||||| |||||||| Sbjct 208 GCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACCGC 149 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGG 127684 || ||| || | |||||||||| ||||||||| Sbjct 148 CGAGAAGGCCACCAGACGCTCGGAGAAGGAGCGG 115 >seq330 Length=56297 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 175901 GTGAAGATGTACCTCGTTTGAGACG-CATCTTTGCCACCCATGAGACGCGTCCCAAATTG 175959 ||| ||||||| | || ||| || | || ||||| ||| || ||||| || || || Sbjct 35758 GTGTAGATGTAACGCGCC-GAGGCGGCGTCCTTGCCGCCCTGCAGCCGCGTGCCGAACTG 35816 Query 175960 ACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGAC 176019 ||| | || | || || |||| ||||| ||||||| |||| | ||||| ||||| Sbjct 35817 ACCGCTGGGGTGCAGCAGGTTGACGTTGTTGGAGCCCACGAAGTCCTGCGCCAGGTTGAC 35876 Query 176020 AATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGC 176079 || | |||| || || || ||||| ||||||||||| | || ||||| || || Sbjct 35877 GATGGCTCCCGCCAGCGACGTCTCGCCGTGGTGGTAGGCCGAGTGCTCGGCCACGTAGGC 35936 Query 176080 CGCCAACTGCGCCACCT 176096 | || ||| ||||||| Sbjct 35937 GGACAGCTGGGCCACCT 35953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613429445631240