Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1311 89.7 8e-13 seq611 86.0 1e-11 >seq1311 Length=25178 Score = 89.7 bits (98), Expect = 8e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| |||||||||||||||| ||| |||||| | |||| | ||||||||| || Sbjct 7388 CTCTACGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGTTGGA 7329 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTG 204996 ||||| ||| |||| ||||||||||| |||| |||| | ||| |||| | ||| Sbjct 7328 CTTGCTGTTGCAGGCGTCCTTGTACAGCATGTACGGGTTACCGGTCTCGACCTG 7275 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943 ||| ||||||||||||||||| |||||||| |||| |||| | ||||| || | || Sbjct 9823 CAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGACGTGAG 9764 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 |||| | ||||||||||| |||| | ||| | |||||| ||||||||| ||| Sbjct 9763 CTTGCCGAAGTTGGGGTCGGGCATGAAGACGTTGAACGACTGGGACTGGTCGATG-TAGG 9705 Query 204004 CGCC 204007 |||| Sbjct 9704 CGCC 9701 >seq611 Length=42128 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 159906 GGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACT 159965 ||| ||| | || ||||| || |||||||||||||| |||||||| |||||||||| | Sbjct 15952 GGTGCTTGTAGAGCAGGCAGGCGAAGTCGCAGTGCAGCCCCTCGTCGCGAGAGATGAGCA 15893 Query 159966 CGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAA 160025 ||||||| | | ||||| ||||||| | ||| || ||||| || |||| ||| Sbjct 15892 CGTTGGAGAAGGACAGGCCGGGCATGAGCAGGCGCTTCTTCAGCCAGAAGATGG-AGCAG 15834 Query 160026 AAGC 160029 |||| Sbjct 15833 AAGC 15830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795054424017840