Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2609 105 8e-18 seq601 105 8e-18 seq8888 93.3 5e-14 seq2491 87.8 2e-12 >seq2609 Length=13299 Score = 105 bits (116), Expect = 8e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||||| ||||| |||||||| | ||| |||||| | Sbjct 1857 CGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTGCGCCCA 1798 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || || ||||||||||||||||| || | |||||||||||||| Sbjct 1797 TCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGG 1755 >seq601 Length=42509 Score = 105 bits (116), Expect = 8e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||||| || |||||| ||||| |||||||| | || |||||| || Sbjct 42420 CGCAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGCCCG 42361 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||||||||| |||| |||||||||||| Sbjct 42360 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 42320 >seq8888 Length=1414 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| |||||||| | || ||||| |||| || Sbjct 1121 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTC 1180 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||||||||||||||||| |||| |||||||||||| Sbjct 1181 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1216 >seq2491 Length=14023 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || ||||| |||| || ||||||||||||||||| Sbjct 14016 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 13957 Query 46462 TATCAAGCGCTGCTGGTC 46479 |||| |||||||||||| Sbjct 13956 GATCAGGCGCTGCTGGTC 13939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565166763098280