Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3145 136 4e-27 seq4172 113 5e-20 seq601 102 8e-17 seq8888 95.1 1e-14 seq2609 91.5 1e-13 seq611 82.4 8e-11 >seq3145 Length=10667 Score = 136 bits (150), Expect = 4e-27 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| || |||||| |||| ||||||||| | || ||||| |||||| ||| || Sbjct 286 CAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGT 227 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | |||||||||||||||||| || |||||||| || |||| | ||| |||||| || Sbjct 226 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAA 167 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 ||||| |||||| || |||| ||| |||||||| |||||| Sbjct 166 GAAGATGCCCTCCACCGCCGAGAAGGCCACCAGACGCTCG 127 >seq4172 Length=7077 Score = 113 bits (124), Expect = 5e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 ||||| || |||||| || | ||||||| || |||| || |||||||||||||| | Sbjct 457 CCTCGGGCAGCTGCACCTCCTTCATGAAACGCACGCCCAGGTTCTCGTTGACGATGCCAT 516 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 ||||||| ||||| |||||||| | |||| |||||| ||||||||| |||| | | Sbjct 517 CGCTGGCCGCGAAGAAGGCCAGGATGTGCGAGATGAAGTGGCGCTCGCCGTCGCTGAGCT 576 Query 133364 GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 |||||||| | |||| | | |||||| |||||||| Sbjct 577 TCTCCCAGTGCTTCATGTCGTCGCCCAGGTCGACCTCCTC 616 >seq601 Length=42509 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| |||| Sbjct 42308 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 42367 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| |||| |||||| |||||||||| || | Sbjct 42368 ACGCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCATCTGGTGCTGCGCCTGCGC 42427 Query 38466 GGCGGC 38471 || ||| Sbjct 42428 GGTGGC 42433 >seq8888 Length=1414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 1228 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1169 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| |||| ||||| ||||||| || || | Sbjct 1168 ACCCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTCCGCCTGCGC 1109 Query 38466 GGCGGCC 38472 || |||| Sbjct 1108 GGTGGCC 1102 >seq2609 Length=13299 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| ||||||| ||||| || || | ||| ||||| ||||| || || | |||| Sbjct 1745 GGCATTCCCCCCGACCAGCAGCGCCTTATCTTCGCCGGCAAGCAGCTTGAGGATGGGCGC 1804 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||||||||||| ||||| ||| |||||||| | |||||||| Sbjct 1805 ACGCTAGCGGACTACAACATCCAGAAGGAGAGC-ACGCTGCACCTCGTGCTGCG 1857 >seq611 Length=42128 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 ||||||||| || ||| ||||| |||| || || ||||||||||||||||||| Sbjct 14820 CACCTGCACCTCGGTCATGAACCGCTCCGCCAGGTTCTCCATGACGATGCCGTCGCTGGC 14761 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 |||||| || |||||||| | ||||||||| Sbjct 14760 GGCGAAGAACGCCAGCACCTTCTTGATGAA 14731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500109409349760