Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1466 113 6e-20 seq3434 107 2e-18 seq805 102 1e-16 seq300 100 4e-16 seq9756 89.7 7e-13 seq2694 89.7 7e-13 seq1441 89.7 7e-13 seq200 89.7 7e-13 >seq1466 Length=22910 Score = 113 bits (124), Expect = 6e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 ||||| || | ||||||||||| || || || ||||| || || || || || | ||| Sbjct 4967 TTCTTGTCCATGCCGTACGCGATGGCGGCGGCGGTTGGCTCGTTGATGATCCGTACGAC- 4909 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| || ||||| || || | || || || || || || || || | || || ||||| Sbjct 4908 GTTGAGCCCAGCGATGGTCCCTGCGTCCTTGGTGGCCTGGCGCTGGGCGTCATTGAAGTA 4849 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 |||||| |||||||||||||||| |||| |||| || ||||| ||||| ||| | || Sbjct 4848 GGCCGGAACCGTTACGACCGCGTGATTGACCGTCTTGCCCAGATAAGATTCGGCGGTTTC 4789 Query 7774 TTTCATTTT 7782 ||||| || Sbjct 4788 CTTCATCTT 4780 >seq3434 Length=9578 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653 ||||| || | ||||||||||| || || || ||||| || || || || || | |||| Sbjct 5548 TTCTTGTCCATGCCGTACGCGATGGCGGCGGCGGTTGGCTCGTTGATGATCCGTACGACA 5607 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || || || || || | || || || || || || || || | || || ||||| Sbjct 5608 -TTGAGCCCGGCGATGGTCCCTGCGTCCTTGGTGGCCTGGCGCTGGGCGTCATTGAAGTA 5666 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||||| |||||||| ||||||| || || |||| ||||| ||||||| ||| | || Sbjct 5667 CGCCGGAACCGTTACAACCGCGTGTGTAACCGTCTTGCCGAGGTACGATTTGGCGGTTTC 5726 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||||| || ||| | ||| | || ||||| |||| Sbjct 5727 CTTCATCTTCTGAAGTATCATGGCCGAGATCTCCTCAG 5764 >seq805 Length=36125 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || || || || || ||||| || |||||||||| || | |||||| || || ||| Sbjct 3718 GTCTCCAGGCCCAGGGACAGGGGGGTCACGTCCAGCAGCAGCAGGTCCTGCACCTTCTCG 3777 Query 7004 TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCG 7063 || || ||||| | ||||| || || || | || ||||| || || ||||||||| Sbjct 3778 CCACCCTCGCCCGTCAGAATGGCAGCCTGCACAGCGGCGCCGTAAGCCACGGCCTCATCG 3837 Query 7064 GGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATT 7123 ||||| |||| || ||||| || || ||||| || | ||| | || || || | Sbjct 3838 GGGTTGATCGACTTGTTCAGCTCCTTGCCGTTGAAGAAGTCCTGCAGCAGCTGCTGGACC 3897 Query 7124 TTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 || ||||| || ||||| || ||||||| |||| Sbjct 3898 TTGGGGATACGGGTCGAGCCGCCGACCAGCACGA 3931 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || ||||| ||||| || | | |||| || || || || || Sbjct 5564 TGGTTCTTGGCGGCATCACCGATGAGACGCTCGGTGT---CCGTGAAGGCCACATAGGAG 5620 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || || || ||||||||||| ||||| || ||||||||||| |||||||| Sbjct 5621 GGCGTGGTGCGGTTGCCCTGGTCGTTCGCGATAATCTCCACGCGGTCGTTCTGCCAGACA 5680 Query 8108 CCGACGCA 8115 |||||||| Sbjct 5681 CCGACGCA 5688 >seq300 Length=58156 Score = 100 bits (110), Expect = 4e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || || || || |||||||| || || || || || || ||||| |||| | Sbjct 42743 TTCTTGTCCAGGCCATAGGCGATAGCGGCGGCGGTAGGCTCGTTGATAATGCGAACCACG 42802 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||| | ||| ||| ||||||| || || || || || || | ||||| |||||| Sbjct 42803 TTAAGGCCGGAAATGGTTCCCGCATCCTTAGTGGCCTGGCGCTGGGCGTCGTTGAAGTAG 42862 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || || || |||| | | || |||| || || | | || || | || Sbjct 42863 GCCGGCACAGTGACCACAGCGTGCTTAACGGTCTTGCCCAGGAAAGCCTCAGCCGTCTCC 42922 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || ||||| ||| | || ||||| || Sbjct 42923 TTCATCTTCTGAAGAATCATAGCGGAGATCTCCTC 42957 >seq9756 Length=1087 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848 |||||||||||||||||||||| ||||||||||| || || ||| ||||||||||||| Sbjct 114 GTGGCCGAGTGGTCTAAGGCGCAGGATTAAGGCTCCTGTCCGCAAGGGCGCAGGTTCAAA 173 Query 131849 TCCTGTCGGCATCA 131862 ||||| | ||||| Sbjct 174 TCCTGCCCACATCA 187 >seq2694 Length=12810 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848 |||||||||||||||||||||| ||||||||||| || || ||| ||||||||||||| Sbjct 4534 GTGGCCGAGTGGTCTAAGGCGCAGGATTAAGGCTCCTGTCCGCAAGGGCGCAGGTTCAAA 4475 Query 131849 TCCTGTCGGCATCA 131862 ||||| | ||||| Sbjct 4474 TCCTGCCCACATCA 4461 >seq1441 Length=23181 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848 |||||||||||||||||||||| ||||||||||| || || ||| ||||||||||||| Sbjct 17740 GTGGCCGAGTGGTCTAAGGCGCAGGATTAAGGCTCCTGTCCGCAAGGGCGCAGGTTCAAA 17681 Query 131849 TCCTGTCGGCATCA 131862 ||||| | ||||| Sbjct 17680 TCCTGCCCACATCA 17667 >seq200 Length=71016 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848 |||||||||||||||||||||| ||||||||||| || || ||| ||||||||||||| Sbjct 497 GTGGCCGAGTGGTCTAAGGCGCAGGATTAAGGCTCCTGTCCGCAAGGGCGCAGGTTCAAA 438 Query 131849 TCCTGTCGGCATCA 131862 ||||| | ||||| Sbjct 437 TCCTGCCCACATCA 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635052304856760