Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq5054 524 9e-144 seq4579 268 1e-66 seq7814 82.4 9e-11 >seq5054 Length=5139 Score = 524 bits (580), Expect = 9e-144 Identities = 540/702 (77%), Gaps = 6/702 (1%) Strand=Plus/Plus Query 179757 TGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCA 179816 ||| | || || || | ||||| | || ||||||||||||| || | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 179817 ACTCTGTTGGCAGCAACTATCTG-CTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGA 179875 ||| | | ||||| ||| | |||||| |||| |||||||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 179876 CATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 179935 ||||||||| ||||||||||| || | ||||| || | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 179936 TGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 179995 ||||| ||||| || |||| ||||| || |||||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 179996 CGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTT 180055 || || | ||||| ||| | |||||||||||||||| |||||| |||| | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 180056 CCTGATTGGCATCTATGC--CTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGT 180113 ||| | || | ||||| ||||||||||||||| |||||| | || | || || ||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGT 1201 Query 180114 ATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTC 180173 ||||| || |||||| || || || || |||||||| ||||| || || ||||||||| Sbjct 1202 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTC 1261 Query 180174 CTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGC 180233 | || || || |||| |||||||||||||| |||| ||||| | || ||||| || Sbjct 1262 TTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGT 1321 Query 180234 ACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCAC 180293 || || |||| |||| | || |||||||| |||||||||||||| |||||||| |||||| Sbjct 1322 ACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCAC 1381 Query 180294 ATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTG 180353 ||| | || || || ||||| || || |||||| | ||||| || |||||||||||| | Sbjct 1382 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTA 1441 Query 180354 GTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAG 180413 ||||| || || | | |||||||| ||||||| || || ||| |||||| Sbjct 1442 GTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGT 1501 Query 180414 TTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACAT 180455 || ||||||||||||||||| |||||||| || ||||| ||| Sbjct 1502 TTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 120 bits (132), Expect = 4e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 180456 GGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCAC 180515 || ||||| |||||||| |||||||| || || || ||||||||||| |||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 180516 TTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 180575 |||||| | || || ||||| || | || || ||||||||||| | || || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 180576 ATGGCATTCAACCTCAACGGTTTC 180599 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 180598 TCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACG 180657 ||||||||||||| || | | || ||||||||||| | ||||||||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 180658 TACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 180717 | ||||||| ||| | ||||||||||| |||||||||||||| ||||||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 180718 C 180718 | Sbjct 5070 C 5070 >seq4579 Length=6132 Score = 268 bits (296), Expect = 1e-66 Identities = 367/510 (72%), Gaps = 2/510 (0%) Strand=Plus/Minus Query 181420 ATGGTTTGAC-ATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGT 181478 ||||||||| || || |||||||||||| | ||||| || || || || || |||| Sbjct 4115 ATGGTTTGATGATGCT-GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGT 4057 Query 181479 CTGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTA 181538 | || || | ||||| || ||||||| ||||| | || |||||| | ||||| || | Sbjct 4056 CAGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAA 3997 Query 181539 CTTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATT 181598 |||||||||| || ||||| || || || || || |||| ||| | || ||| ||| | Sbjct 3996 CTTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACT 3937 Query 181599 TCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTT 181658 || | || || || || ||||| || || || | | | ||| |||||||| | ||| Sbjct 3936 TCTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTT 3877 Query 181659 GGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTT 181718 |||||||||||||||| || |||||| || ||| || ||||| || | ||||| | Sbjct 3876 GGGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCAT 3817 Query 181719 TTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTG 181778 || | || | ||||| || || | | | || ||||| ||||| | || |||||| ||| Sbjct 3816 TTATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTG 3757 Query 181779 CTCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTAT 181838 ||||| | | | || || || || || |||||||| || | ||| |||||||| | Sbjct 3756 CTCGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTT 3697 Query 181839 TCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTT 181898 || ||||| || || || ||||| | || ||||| ||||||||||||| || || | Sbjct 3696 TCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCT 3637 Query 181899 TCGGTGTCGCGGCGATTTTCCGCTTCCTTC 181928 | ||||| || || || ||||| ||| ||| Sbjct 3636 TTGGTGTTGCAGCAATCTTCCGTTTCATTC 3607 Score = 174 bits (192), Expect = 2e-38 Identities = 227/314 (72%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 182123 ACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTG 182182 || || ||||| |||||||| || ||||| ||| | || || || || | ||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 182183 CATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATT 182242 || ||||| ||| | || |||||||||| ||||| |||| | | || |||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 182243 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAA 182302 ||| | || | ||| | |||||||||||||| || || ||||| || | || | ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 182303 GACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCA 182362 ||||| || || || || |||||||| || ||| || | || ||||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 182363 TGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCC 182422 ||| | || || ||||||||||| ||||| |||||||| ||||||||||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 182423 AGAGGTAACGCACT 182436 | |||||||| || Sbjct 426 CGTGGTAACGCTCT 413 Score = 109 bits (120), Expect = 7e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 181927 TCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGC 181986 ||| || |||| || |||||||| ||||| | || || ||||| |||||||||||||| Sbjct 2140 TCTGTTTTTCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGC 2081 Query 181987 TGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCT 182046 |||| | | |||| || ||| | | ||| |||||||||| || || || || || | Sbjct 2080 TGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATT 2021 Query 182047 GTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGA 182106 | | |||| ||||| || || |||||| |||||| | | || || | ||||| Sbjct 2020 ATTTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGA 1961 Query 182107 AACCTATTCAATGGT 182121 ||| ||||| ||||| Sbjct 1960 AACATATTCTATGGT 1946 >seq7814 Length=1945 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 || |||||||||||| || ||||| || ||||||| || ||||||||||||||| || Sbjct 169 TCTTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 228 Query 141315 CTACCTGGGGAGT 141327 ||||||||||||| Sbjct 229 CTACCTGGGGAGT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610319439835560