Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq5054 511 6e-140 seq4579 233 2e-56 >seq5054 Length=5139 Score = 511 bits (566), Expect = 6e-140 Identities = 544/710 (77%), Gaps = 6/710 (1%) Strand=Plus/Plus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 ||||| | ||| | || ||||| | ||| | | || | |||||||| ||||| | Sbjct 836 TTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 895 Query 169462 ATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACCT 169521 ||||||||||| | || || ||| || || |||||| | || ||||| || || || Sbjct 896 ATGATTCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 955 Query 169522 CCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT-TTCTTGTATGGTAACAA 169580 || || || ||||| || ||| | |||||||| | |||||| ||||| || |||||||| Sbjct 956 CCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTT-TACGGTAACAA 1014 Query 169581 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAAT 169640 ||| || || ||||| ||||| ||| | || ||||||||||| || |||||||||||||| Sbjct 1015 CATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAAT 1074 Query 169641 CTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAAT 169700 |||||||| || || | || |||||||| ||||| ||||||||||| || | | | Sbjct 1075 TTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGT 1134 Query 169701 CTTCCACTTCCTTATTGGTATCT-CAGCATACATGGGAAGACAGTGGGAACTATCATACA 169759 | |||||||||| | ||| | | | || |||||||| | | |||||| |||| | | Sbjct 1135 TTGCCACTTCCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCC 1193 Query 169760 GATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCG 169819 | ||||| |||||||| |||||| |||||| ||||| || |||||| ||||||| | | Sbjct 1194 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAG 1253 Query 169820 CTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 169879 ||||||||||||| |||||| | || || ||||||||||| || ||||||||| |||||| Sbjct 1254 CTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTA 1313 Query 169880 TCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATC 169939 | |||||||| || ||||| ||| |||| |||||||| ||||| ||||| || ||||| | Sbjct 1314 TTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 1373 Query 169940 CTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATG 169999 | ||||||||| ||| || || || | || || || || |||||||| || ||||| | Sbjct 1374 CGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACG 1433 Query 170000 GTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTC-ACAGAACTAT 170058 ||||| | |||||||||||| ||||| | |||||||| || | || || ||| ||| Sbjct 1434 GTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCA 1492 Query 170059 GGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACA 170108 ||||| ||||| ||||||||||| || |||||||| ||||| || || Sbjct 1493 GGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 170110 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACAC 170169 ||||||||||||||||| |||||||| || ||||||||||||||||| | ||||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 170170 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACA 170229 |||||| |||| | || || || | || | ||||| || || | ||| | | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 170230 ATGGCATTCAACTTGAATGGTTTC 170253 |||||||||||||| || |||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 >seq4579 Length=6132 Score = 233 bits (258), Expect = 2e-56 Identities = 353/502 (70%), Gaps = 0/502 (0%) Strand=Plus/Minus Query 170526 TGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCT 170585 |||||||||| | ||| |||||| | ||| ||||| |||||| |||| ||||| Sbjct 4114 TGGTTTGATGATGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 4055 Query 170586 GGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACC 170645 ||| | |||||| | |||||||| || | || | ||||| ||||| || || || Sbjct 4054 GGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACT 3995 Query 170646 TTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTC 170705 || ||||||||||||||||| |||||| | ||| | || || | || || ||||||||| Sbjct 3994 TTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 3935 Query 170706 CTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGG 170765 |||| ||||| ||||| ||||| || | | ||| |||||| || ||||| Sbjct 3934 TTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGG 3875 Query 170766 GGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTT 170825 || |||||||| |||||| || ||||||| || || || ||||||||| ||| Sbjct 3874 GGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTT 3815 Query 170826 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCA 170885 | |||||||| || | ||||| | || ||||||||||| | || ||||| || || Sbjct 3814 ATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 3755 Query 170886 GGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTC 170945 | ||| | | | || || ||||| | || ||||| ||| || || || ||| Sbjct 3754 CGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTTC 3695 Query 170946 ACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTC 171005 ||| | || || || |||||| ||||||| |||||||||| || ||| || Sbjct 3694 ACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTTT 3635 Query 171006 GGTGTCGCAGCAATTTTTCGTT 171027 ||||| |||||||| || |||| Sbjct 3634 GGTGTTGCAGCAATCTTCCGTT 3613 Score = 197 bits (218), Expect = 2e-45 Identities = 237/320 (74%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || |||||| | ||||||||||| || |||||| | |||||||| |||||| | | | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 |||||| | ||||| || |||||||| | ||| | |||| || |||| ||||| ||| Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 ||| ||||| | ||| | | || || || || || ||||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 ||||| || || || ||||||||||| || || | | | ||||||||||| | || Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 171489 TGGATGTCA--TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTAC 171546 |||||| | ||| |||||||||||||| || || ||||| |||||||| |||| Sbjct 486 TGGATGGCTGTTCAA--GACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTAC 429 Query 171547 CAAGAGGTAACGCACTTTAA 171566 | | |||||||| || ||| Sbjct 428 CTCGTGGTAACGCTCTATAA 409 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 171042 CAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTA 171101 |||||||| || ||| || || || ||||| ||||||||||||||||| || | || Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 171102 GGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGA 171160 |||| || ||||||||||| ||||| ||||| || || | |||||||| | |||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGA 2012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579139392017760