Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq5054 515 5e-141 seq4579 260 2e-64 >seq5054 Length=5139 Score = 515 bits (570), Expect = 5e-141 Identities = 538/701 (77%), Gaps = 4/701 (1%) Strand=Plus/Plus Query 167872 TGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 167931 ||| | || |||||| | ||||| | || ||||||||||||| ||| | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 167932 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 167990 ||| | | ||||| ||| || |||||| |||| ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 167991 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 168050 |||||| || ||||||||||| || | ||||| || | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 168051 TGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGC 168110 ||||| ||||| || ||||||| ||||| || ||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 168111 AGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTT 168170 || || | || || ||||| |||||||||||||||| ||||||| | || | ||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 168171 CCTCATCGGTATCT-ATGCATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTA 168229 ||| | ||| | | ||| |||||||| |||||||||||| | || | |||||||||| Sbjct 1144 CCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTA 1202 Query 168230 TGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCC 168289 |||||||||||||| |||||| ||||| || ||||| ||||| || || |||||| Sbjct 1203 TGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCT 1262 Query 168290 TAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAA 168349 |||| || || |||| |||||| ||||| || | |||||| | || || ||||| | Sbjct 1263 TAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTA 1322 Query 168350 CATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATA 168409 |||| |||| |||| | || ||||||||||||||||| || || ||||| || ||||| | Sbjct 1323 CATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACA 1382 Query 168410 TGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGG 168469 || | || |||||||| ||||||||||| || || |||||||||||| || | Sbjct 1383 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAG 1442 Query 168470 TTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGT 168529 ||||||| ||| | | | || || ||||||| |||||| |||| |||||| | Sbjct 1443 TTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTT 1502 Query 168530 TCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCAT 168570 |||| ||||||||||| || |||||||| ||||| |||||| Sbjct 1503 TCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 143 bits (158), Expect = 3e-29 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 168571 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCAC 168630 |||||||| |||||| | ||||||||||||||||||||||||||||| || || || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 168631 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 168690 |||||| | ||||| ||||| || |||| || |||||||| || | || | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 168691 ATGGCATTCAACCTGAACGGTTTC 168714 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 168713 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 168772 ||||||||||||| || | | || || |||||||| || ||||| ||||| || Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 168773 TTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 168832 | | ||||| ||| | ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 168833 C 168833 | Sbjct 5070 C 5070 >seq4579 Length=6132 Score = 260 bits (288), Expect = 2e-64 Identities = 360/504 (71%), Gaps = 0/504 (0%) Strand=Plus/Minus Query 169304 TGGTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCT 169363 ||||| |||| | ||||||||||| | ||||| || |||||| | |||||||| Sbjct 4114 TGGTTTGATGATGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 4055 Query 169364 GGTCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCG 169423 ||| || | ||| | || ||| ||| |||| | || || ||| | ||||||||| | Sbjct 4054 GGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACT 3995 Query 169424 TTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTC 169483 |||||||| || ||||| || || || | ||| | |||||||||||| ||||||| Sbjct 3994 TTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 3935 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | ||||| || || ||||| || || | | | ||||| || || || | ||| Sbjct 3934 TTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGG 3875 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||| ||||| ||||| |||||| || |||||||| | |||||| | ||| ||| Sbjct 3874 GGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTT 3815 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 | ||| | || |||||||||| || ||||||||||||||| | ||||||||| | || Sbjct 3814 ATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 3755 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 ||| | | | ||||| ||||| |||||||| ||||| | ||| |||||||| || Sbjct 3754 CGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTTC 3695 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 ||| || || || || ||| | || || || |||||||||||||| |||| Sbjct 3694 ACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTTT 3635 Query 169784 GGAGTATCAGCAATCTTCAGGTTC 169807 || || ||||||||||| | ||| Sbjct 3634 GGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 210 bits (232), Expect = 3e-49 Identities = 235/314 (75%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 170006 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTT 170065 ||||||||||| |||||||| || ||||| ||| | || || || ||||| ||||||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 170066 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATT 170125 || || |||||||| || || ||||||| ||||| |||| || ||||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 170126 GGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 170185 || | || | || | |||||||| || ||||| ||| ||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 170186 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCA 170245 || || |||||||| || |||||||| |||||| | |||| |||||||| ||||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 170246 TGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCG 170305 ||| |||| | || |||||||||||| || | ||||| |||||||| | || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 170306 AGAGGTAACGCACT 170319 | |||||||| || Sbjct 426 CGTGGTAACGCTCT 413 Score = 123 bits (136), Expect = 3e-23 Identities = 146/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 169808 CTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTA 169867 ||||| |||| |||| || || |||||||| || || |||||||||||||||||||| Sbjct 2139 CTGTTTTTCC---AAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTT 2083 Query 169868 GCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACA 169927 || || | || || | || || | | |||||| || |||| ||| ||||| |||||| Sbjct 2082 GCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACA 2023 Query 169928 TTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAA 169987 || | |||||| ||||| || || |||||| || || | | ||||||| ||| Sbjct 2022 TTATTTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAA 1963 Query 169988 GAGACTTATTCTATGGT 170004 || || ||||||||||| Sbjct 1962 GAAACATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574400792652120