Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq5054 504 8e-138 seq4579 262 4e-65 >seq5054 Length=5139 Score = 504 bits (558), Expect = 8e-138 Identities = 535/700 (76%), Gaps = 4/700 (1%) Strand=Plus/Plus Query 163794 TGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCT 163853 ||| | ||||| || | ||||| | || | ||||||||||| || | ||||| || Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 163854 ACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 163912 || ||| | |||| |||| || |||||| |||| ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 163913 CATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTC 163972 |||||||||||| |||||||| ||| ||||||| || | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 163973 TGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGC 164032 ||||| ||||| || | || || || || ||||||||||||||||| ||||||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 164033 CGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTT 164092 || || | || |||||| | || ||||||||||||| |||||| |||| | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 164093 CCTGATCGGTATCT-ATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTA 164151 ||| | ||| | | ||| |||||||||||||| |||||| | || | |||| | |||| Sbjct 1144 CCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTA 1202 Query 164152 TGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCC 164211 ||||||| ||||| |||||||||||| || || || || || || || || || ||| Sbjct 1203 TGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCT 1262 Query 164212 TGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCA 164271 | || || || |||| |||||||| ||||| |||| ||||| | || || || || | Sbjct 1263 TAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTA 1322 Query 164272 CCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATA 164331 | || |||| |||| | || |||||||| |||||||||||||| |||||||| ||||| | Sbjct 1323 CATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACA 1382 Query 164332 TGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGG 164391 || | || |||||||| |||||||| ||||| | ||| ||| ||||||||||| | | Sbjct 1383 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAG 1442 Query 164392 TTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGT 164451 ||||||| || | | |||||||| || |||| || || ||| |||||| | Sbjct 1443 TTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTT 1502 Query 164452 TTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCA 164491 | |||||||||||||| || ||||||||||| || ||||| Sbjct 1503 TCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 156 bits (172), Expect = 5e-33 Identities = 121/144 (84%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 164493 GGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 164552 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 164553 TTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACG 164612 |||||| | ||||| ||||| || | || || |||||||| || | ||| | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 164613 ATGGCATTCAACCTGAACGGTTTC 164636 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 164635 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACG 164694 ||||||||||||| || | | || || |||||||| | ||||||||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 164695 TTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCC 164754 | ||||||| ||| | ||||||||||| |||||||||||||||||||||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 164755 C 164755 | Sbjct 5070 C 5070 >seq4579 Length=6132 Score = 262 bits (290), Expect = 4e-65 Identities = 368/513 (72%), Gaps = 10/513 (2%) Strand=Plus/Minus Query 165191 TGGTTCGATG-TCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTC 165249 ||||| |||| | || |||||||||||| | ||| |||||||| || || |||||||| Sbjct 4114 TGGTTTGATGATGCT-GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 165250 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTAC 165309 || | | ||||| || ||||||| |||| | || || ||| ||||||| || || Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 165310 TTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTT 165369 ||| | || ||||||||||| || || || | ||| || | || ||| ||||| Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 165370 TCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTG 165429 | ||||| || ||||| || ||| | || | | | ||| |||||||| || | || Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 165430 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTT 165489 ||||||||| |||||||| |||||| | ||| || ||||| || | ||||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 165490 TGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGC 165549 | | || | ||||| || || | | ||||||||||||||||||||||||||||| | || Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 165550 ACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 165605 ||| || ||| | ||||| || || |||||||| ||||| | ||| || |||| Sbjct 3755 TCGT----TCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTG 3700 Query 165606 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 165665 |||| | || || || || || || | |||||||| ||||||| || |||||| Sbjct 3699 TTTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAA 3640 Query 165666 CTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTC 165698 || || || |||||||||||| | ||| ||| Sbjct 3639 GCTTTGGTGTTGCAGCAATCTTCCGTTTCATTC 3607 Score = 219 bits (242), Expect = 5e-52 Identities = 237/314 (75%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 165893 ACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTG 165952 |||||||||||||||||||| || ||||| ||| | || || || || | ||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 165953 CATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATT 166012 || ||||| ||| | || |||||||||| ||||| |||| | | || |||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 166013 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAA 166072 ||| | || | ||| | |||||||||||||| || || |||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 166073 GACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCT 166132 ||||| || |||||||| ||||||||||||||| || | || ||||||||| |||||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 166133 TGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCT 166192 ||| |||| || ||||| ||||| ||||| |||||||||||||| | ||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 166193 AGGGGTAACGCGCT 166206 | |||||||| || Sbjct 426 CGTGGTAACGCTCT 413 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 165707 CAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTG 165766 ||||| || ||||||||||| || || || || || |||||||||||||| ||| | | Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 165767 GGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGAT 165826 |||| ||| || | | ||| || || |||| ||| ||||| || || | | | ||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGAT 2011 Query 165827 GGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCA 165886 ||||| | ||| || |||||| ||||| || |||| || | |||||||| || || Sbjct 2010 GGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATTCT 1951 Query 165887 ATGGT 165891 ||||| Sbjct 1950 ATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854216743160