Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq5054 488 6e-133 >seq5054 Length=5139 Score = 488 bits (540), Expect = 6e-133 Identities = 510/667 (76%), Gaps = 2/667 (0%) Strand=Plus/Plus Query 168533 GGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTT 168592 |||||||||||||| | ||||| |||||| | | || ||| || || ||||| | Sbjct 878 GGTTGGTTCGGTGTAATCATGATTCCATGTCTTCTTACTGCAACATCAGTATTCATCATC 937 Query 168593 GCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCT 168652 || || || ||||| || || || || ||||| || ||| | ||||| || ||||| || Sbjct 938 GCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCT 997 Query 168653 CTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 168712 || | || || |||||||| || |||||||| ||||| ||| |||| ||||| |||||| Sbjct 998 CTTCTTTACGGTAACAACATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGT 1057 Query 168713 CTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGT 168772 || ||||||||||||||||||||||| ||| | | || || ||||||||||| |||||| Sbjct 1058 CTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGT 1117 Query 168773 CCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCT-CTGCCTACATGGGTAGACA 168831 |||||||| | | | | ||||||||| | || | | ||| |||||||||| | | Sbjct 1118 CCTTACCAACTAATCGTTTGCCACTTCCTTTTAGGTGTATGCTG-CTACATGGGTCGTGA 1176 Query 168832 GTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACC 168891 ||||||||||| | | | |||||||| | || |||||| ||||||||| ||||| || Sbjct 1177 ATGGGAATTATCGTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCC 1236 Query 168892 AGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGA 168951 |||| |||| || | || |||||| | || |||||| | || || ||||| ||||| || Sbjct 1237 AGTAGCTGCTGCTTCAGCTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGA 1296 Query 168952 TGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCA 169011 |||||||| |||| ||||| || ||||| ||||||||| ||||||||||||| ||||| Sbjct 1297 CGGTATGCCATTAGGTATTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCA 1356 Query 169012 CAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCT 169071 |||||| |||||||| || ||||| ||| ||| || || ||| | || ||||| || | Sbjct 1357 CAACATCCTTATGCACCCGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATT 1416 Query 169072 ATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGA 169131 |||||| || ||||| |||||| | || || || ||| ||||| | || || ||||| | Sbjct 1417 ATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAA 1476 Query 169132 AGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGC 169191 |||||| ||| |||||| ||||||||||||||||| || || || ||||| || Sbjct 1477 CGAATCTACAAACGCAGGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGC 1536 Query 169192 AGCACAT 169198 || ||| Sbjct 1537 TGCTCAT 1543 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447 || |||| ||| | | ||| | || ||| | ||||||||||||||||| ||||||||| Sbjct 4997 ACTTGGGCGGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 5056 Query 169448 GCTCACAACTTCCCACTAGACTTAGCATCTGCT 169480 |||||||||||||| |||||||||| ||| || Sbjct 5057 GCTCACAACTTCCCGTTAGACTTAGCTTCTTCT 5089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564370064082720