Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq5054 489 2e-133 seq4579 230 3e-55 >seq5054 Length=5139 Score = 489 bits (542), Expect = 2e-133 Identities = 534/701 (76%), Gaps = 6/701 (1%) Strand=Plus/Plus Query 171829 TGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTCATGATCCCA 171888 ||| | || |||||| | ||| | | || | ||||||||||||||| ||||||| ||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 171889 TGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGAT 171948 ||| | || || ||| || || |||||| | || ||||| || || || || || || Sbjct 905 TGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGAC 964 Query 171949 ATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAACATCATCTC 172007 ||||| || ||| | ||||||||| | |||||| ||||| || ||||||||||| || || Sbjct 965 ATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTT-TACGGTAACAACATTATTTC 1023 Query 172008 TGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGC 172067 ||||| ||||| ||| | || ||||| || ||||| ||||||||||| || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 172068 AGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTT 172127 || | |||| |||||||| || || ||||||||||| || | | | | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 172128 CCTTATCGGTATCT-CAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTA 172186 |||| | ||| | | | || |||||||| | | |||||| |||| | | | ||||||| Sbjct 1144 CCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTA 1202 Query 172187 TGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCC 172246 || | |||||||| ||| || || ||||| || ||| | || || | ||||| ||| Sbjct 1203 TGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCT 1262 Query 172247 TTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTA 172306 | || || ||| |||| || ||||||||||| || ||||||||| ||||||| ||||||| Sbjct 1263 TAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTA 1322 Query 172307 CGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACA 172366 | || ||||| ||| |||| |||||||| ||||| ||||| || ||||| || ||||||| Sbjct 1323 CATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACA 1382 Query 172367 TGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAG 172426 || ||| || || || | ||||| || || |||||||| || ||||||||||| |||| Sbjct 1383 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAG 1442 Query 172427 TTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATC-ACAGAACTACGGATACAAG 172485 |||| || ||| ||||| | || ||||||||| ||||| ||| ||| || ||| Sbjct 1443 TTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCGT 1501 Query 172486 TTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACA 172526 ||||| ||||||||||| || |||||||| ||||| || || Sbjct 1502 TTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 172528 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCAC 172587 ||||||||||||||||| |||||||| || ||||| ||||||||||| | | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 172588 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACA 172647 |||||| |||| | || || || | || | ||||| || || | ||| | | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 172648 ATGGCATTCAACCTTAACGGTTTC 172671 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 >seq4579 Length=6132 Score = 230 bits (254), Expect = 3e-55 Identities = 352/502 (70%), Gaps = 0/502 (0%) Strand=Plus/Minus Query 172948 TGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 173007 |||||||||| | ||| |||||| | ||| |||||||||||| | || ||||| Sbjct 4114 TGGTTTGATGATGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 4055 Query 173008 GGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACC 173067 ||| | |||||| | ||||||||||| || | | ||||| ||||| || || || Sbjct 4054 GGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACT 3995 Query 173068 TTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTT 173127 || ||||||||||||||||| |||||| | || |||| || | ||||| ||||| Sbjct 3994 TTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 3935 Query 173128 TTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGG 173187 ||||| ||||| || || ||||| || | | ||| |||||| || ||||| Sbjct 3934 TTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGG 3875 Query 173188 GGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTT 173247 || |||||||| |||||| ||| |||||||| || || || || ||||| ||| Sbjct 3874 GGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTT 3815 Query 173248 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCA 173307 | |||||||| || | ||||| | || ||||||||||| ||||||||||| || || Sbjct 3814 ATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 3755 Query 173308 GGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTC 173367 | ||| | | | || || ||||| | || ||||| ||| || || || ||| Sbjct 3754 CGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTTC 3695 Query 173368 ACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTC 173427 ||| | || |||| || ||| |||| || |||||||||| || || || Sbjct 3694 ACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTTT 3635 Query 173428 GGTGTCGCAGCAATCTTTCGTT 173449 ||||| ||||||||||| |||| Sbjct 3634 GGTGTTGCAGCAATCTTCCGTT 3613 Score = 178 bits (196), Expect = 2e-39 Identities = 232/321 (72%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | ||||||||||| || |||||| | || || ||||||||| | | | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 |||||| ||||||| || || ||||| | ||| | |||| || | || ||||| ||| Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||| | ||| | ||| | | || || ||||| || ||||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 || || || || || ||||||||||| || || | | | ||||||||||| | || Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | | ||| ||||||||||| || || || || |||||||| ||||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 173971 AGAGGTAACGCACTTTAAATA 173991 | |||||||| || ||| || Sbjct 426 CGTGGTAACGCTCTATAATTA 406 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 173464 CAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTA 173523 |||||||| || ||| || || || ||||| ||||||||||||||||| || | || Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 173524 GGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGA 173582 |||| || ||| ||||||| ||||| ||||| || || | |||||||| | |||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGA 2012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587976671861040