Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq5054 522 3e-143 seq4579 298 6e-76 >seq5054 Length=5139 Score = 522 bits (578), Expect = 3e-143 Identities = 542/703 (77%), Gaps = 8/703 (1%) Strand=Plus/Plus Query 162394 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 162453 ||| | ||||| || | ||||| | || ||||||||||||| ||| | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 162454 ACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 162512 ||| | | |||| |||| || |||||| |||| ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 162513 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 162572 |||||| || ||||||||||| || | ||||| || | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 162573 TGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 162632 ||||| ||||| ||| |||| ||||| || |||||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 162633 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTT 162692 || || | || || ||| | |||||||||||||||| |||||| | || | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 162693 CCTGATCGGCATCTATGC--CTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGT 162750 ||| | || | ||||| ||||||||| |||||||||||| | || | |||| | ||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGT 1201 Query 162751 ATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTC 162810 ||||||||||||||| || || ||||| || || || || || || || || || ||| Sbjct 1202 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTC 1261 Query 162811 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGT 162870 | || || || |||| |||||||| ||||| |||| ||||| || ||||| ||| Sbjct 1262 TTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGT 1321 Query 162871 ACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCAC 162930 ||||| |||| |||| | || |||||||| ||||||||||| || ||||| || |||||| Sbjct 1322 ACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCAC 1381 Query 162931 ATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTG 162990 ||||| ||||| || ||||| || ||||||||| | ||| ||| ||||||||||| || Sbjct 1382 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTA 1441 Query 162991 GTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTC-ACAGAACTATGGTTACAA 163049 ||||| || || | ||||||| || ||||||| || || ||| ||| |||||| Sbjct 1442 GTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCG 1500 Query 163050 GTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCAT 163092 |||||||||||||||||||| |||||||| || || || ||| Sbjct 1501 TTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 143 bits (158), Expect = 3e-29 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 163093 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCAC 163152 |||||||| |||||| | ||||||||||| || |||||||||||||| ||||| || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 163153 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACC 163212 |||||| | ||||| ||||| || |||| || |||||||| || | || | ||||| Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 163213 ATGGCATTCAACCTGAACGGTTTC 163236 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 163235 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACG 163294 ||||||||||||| || | | || || |||||||| || ||||| ||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 163295 TTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCC 163354 | | |||||||| || ||||||||||| ||||||||||| || ||||||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 163355 C 163355 | Sbjct 5070 C 5070 >seq4579 Length=6132 Score = 298 bits (330), Expect = 6e-76 Identities = 373/506 (74%), Gaps = 4/506 (1%) Strand=Plus/Minus Query 163618 TGGTTTGATG-TCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTC 163676 |||||||||| | ||| ||||||||||| | || ||||||||||| | |||||||| Sbjct 4114 TGGTTTGATGATGCTG-ATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 163677 TGGATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAAC 163736 || ||| ||||| | || ||||||| | ||| | ||||||||| ||||||||||||| Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 163737 TTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTT 163796 ||| ||||| || ||||| || ||||| | || ||||| || | || ||| ||| || Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 163797 TCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTG 163856 | || || || || ||||| || || || | | | ||| |||||||| || | || Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 163857 GGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTT 163916 ||||||||| ||||| || |||||| || ||| || ||||| || | ||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 163917 TGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGC 163976 | | ||| | ||||| || |||| | | ||||||||||||||||| || |||||| |||| Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 163977 TCGCCTGATTGGA-ATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCT 164035 ||| | | | | | | || || || || ||||||||||| | ||| |||||||| | Sbjct 3755 TCG-TTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTT 3697 Query 164036 TCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTT 164095 || | ||| || || || || || | ||||||||| |||||||||| |||||| | Sbjct 3696 TCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCT 3637 Query 164096 TTGGAGTGGCAGCAATCTTCAGATTC 164121 |||| || |||||||||||| | ||| Sbjct 3636 TTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 203 bits (224), Expect = 4e-47 Identities = 239/322 (74%), Gaps = 6/322 (2%) Strand=Plus/Minus Query 164320 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTT 164379 ||||||||||| |||||||| || ||||| ||||| || || || ||||| || |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 164380 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATT 164439 || || |||||||| || || ||||||| |||||||||| || ||||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 164440 GGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAA 164499 || | || | || | |||||||| || || || |||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 164500 GATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCA 164559 || ||||| || || |||||||| || || ||| | ||||| || ||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 164560 TGGTTAGCACCAGTT---GACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTG 164616 ||| | | | ||| ||||| ||| ||| | ||||| ||||| ||||||||| | Sbjct 486 TGGATGG---CTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTA 430 Query 164617 CCGAGAGGTAATGCGCTTTAAT 164638 || | ||||| || || |||| Sbjct 429 CCTCGTGGTAACGCTCTATAAT 408 Score = 136 bits (150), Expect = 4e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 164134 CAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 164193 ||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||||| | || Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 164194 GGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGAT 164253 || | || || ||| |||||||||||| | || || ||||| ||||| | ||||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGAT 2011 Query 164254 GGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCT 164313 || || || ||||| || || || | | ||||||| ||||| || |||||| Sbjct 2010 GGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATTCT 1951 Query 164314 ATGGT 164318 ||||| Sbjct 1950 ATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557513333197800