Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq5054 544 9e-150 seq4579 244 1e-59 >seq5054 Length=5139 Score = 544 bits (602), Expect = 9e-150 Identities = 552/712 (78%), Gaps = 8/712 (1%) Strand=Plus/Plus Query 167088 TTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTG 167147 ||||| | |||| |||| ||| | |||||| | || ||||||||||||| || | Sbjct 836 TTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 895 Query 167148 ATGATCCCTACGT-TGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 ||||| || | || | ||| | ||||| ||| || ||||||||||| ||| ||| ||||| Sbjct 896 ATGATTCC-ATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 953 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 | || || ||||||||||||||||| ||||||||| | ||||| || | || ||||||| Sbjct 954 CGCCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACA 1013 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 |||| || || ||||| ||||| || ||||||| ||||| |||||||||||||| || | Sbjct 1014 ACATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAA 1073 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | |||||||| || | | ||||| ||||| || || |||||||||| |||||| | | Sbjct 1074 TTTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCG 1133 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGC--CTATATGGGTCGTGAGTGGGAACTCTCTTA 167443 ||| ||||||||| | || | ||||| ||| ||||||||||| |||||| | || | Sbjct 1134 TTTGCCACTTCCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTT 1191 Query 167444 CCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATC 167503 |||| | ||||||||||| |||||| |||||| ||||| |||||||| ||||| || || Sbjct 1192 CCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTC 1251 Query 167504 TGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGG 167563 ||||||||| | || || || |||| |||||||| ||||| |||| ||||| | || Sbjct 1252 AGCTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGG 1311 Query 167564 TATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCA 167623 ||| || |||||||| |||| |||| | || |||||||| |||||||||||||| ||||| Sbjct 1312 TATTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCA 1371 Query 167624 CCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCA 167683 ||| ||||| ||| | || |||||||| ||||| || ||||| | ||| ||| ||||| Sbjct 1372 CCCGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCA 1431 Query 167684 CGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTA 167743 |||||| | ||||| || || | | |||||||| || |||| || || ||| Sbjct 1432 CGGTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGC 1491 Query 167744 TGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCAT 167795 |||||| |||||||| ||||||||||| || ||||| || ||||||||| Sbjct 1492 AGGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 167796 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCAC 167855 |||||||| ||||| || |||||||||||||| || ||||||||||| || || | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 167856 TTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGT 167892 |||||||| || || ||||| || | ||||| |||| Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGT 3725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 167985 ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 168044 |||||||| ||| | ||||||||||| | ||||||||||| |||||||||||||| Sbjct 4997 ACTTGGGCGGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 5056 Query 168045 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCT 168077 |||||||||||||| | ||| | ||| || || Sbjct 5057 GCTCACAACTTCCCGTTAGACTTAGCTTCTTCT 5089 >seq4579 Length=6132 Score = 244 bits (270), Expect = 1e-59 Identities = 364/513 (71%), Gaps = 10/513 (2%) Strand=Plus/Minus Query 168480 TGGTTCGATG-TCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTC 168538 ||||| |||| | || |||||||||||| | || |||||||| || || |||||||| Sbjct 4114 TGGTTTGATGATGCT-GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 168539 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGC 168598 || | | ||||| || ||||||| |||| | || || ||| ||||||| || | Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 168599 TTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTT 168658 ||| || || ||||||||||| || || || | ||| || | || || ||||| Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 168659 TCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTG 168718 | ||||| || ||| || ||| | | | | | ||| |||||||| || | || Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 168719 GGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTT 168778 ||||||||| || ||||| |||||| | |||||||| ||||| || | ||||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 168779 TGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGC 168838 | | || | ||||| || || | | |||| |||||||||||||||||||||||| | || Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 168839 ACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 168894 ||| || ||| | ||||| || || |||||||| ||||| | ||| || |||| Sbjct 3755 TCGT----TCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTG 3700 Query 168895 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 168954 |||| | || || || || || || | |||||||| ||||||| || |||||| Sbjct 3699 TTTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAA 3640 Query 168955 CTTTCGGGGTCTCAGCAATCTTCCGATTCCTTC 168987 || || || ||||||||||||| ||| ||| Sbjct 3639 GCTTTGGTGTTGCAGCAATCTTCCGTTTCATTC 3607 Score = 197 bits (218), Expect = 2e-45 Identities = 232/314 (74%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 169182 ACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTG 169241 |||||||||||||||||||| || ||||||||| | || ||| || || | ||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 169242 CATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATT 169301 || ||||| ||| | || |||||||||| ||||| |||| | | || |||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 169302 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAA 169361 ||| | || | ||| | |||||||||||||| ||||| |||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 169362 GATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCA 169421 || || || ||||| || |||||||| || ||| | | || || |||||| ||||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 169422 TGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCC 169481 ||| | || | || ||||| ||||| ||||| |||||||| |||||| | || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 169482 CGAGGTAATGCCCT 169495 || ||||| || || Sbjct 426 CGTGGTAACGCTCT 413 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 168996 CAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTG 169055 ||||| || ||||||||||| | || ||||| || ||||||||||| || ||| |||| Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 169056 GGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGAT 169115 || | || || | | ||| ||||| |||| ||| ||||| || || | | | ||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGAT 2011 Query 169116 GGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCA 169175 ||||| || || |||||| ||||| || || |||| || || || ||||| Sbjct 2010 GGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATTCT 1951 Query 169176 ATGGT 169180 ||||| Sbjct 1950 ATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560536949943600