Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq5054 513 2e-140 >seq5054 Length=5139 Score = 513 bits (568), Expect = 2e-140 Identities = 540/708 (76%), Gaps = 2/708 (0%) Strand=Plus/Plus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 ||||||| ||| ||||||| ||||| || ||| | ||| | |||||||| ||||| || Sbjct 836 TTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 895 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 |||||||| || || || | || || | |||||| | || ||||||||||| || Sbjct 896 ATGATTCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 955 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || || ||||| || ||| | || |||||| | |||||| | | || ||||||||| Sbjct 956 CCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAAC 1015 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 || || || |||||||||||||| | ||| ||||| ||||| | ||||||||||| || Sbjct 1016 ATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATT 1075 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| || | | ||||||||| | || || ||||| |||| |||||| | | Sbjct 1076 TGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTT 1135 Query 215594 TTCCACTTCCTCATTGGTATTT-CTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAG 215652 | ||||||||| | ||| | | |||| ||| || | | |||||| | || | | | Sbjct 1136 TGCCACTTCCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCG 1194 Query 215653 ATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGC 215712 ||||||||| | || |||||| |||||||||||| || || ||| ||||||| | || Sbjct 1195 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGC 1254 Query 215713 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAAT 215772 |||||| | || || ||| |||| || ||||| ||||| || | ||||||| | || || Sbjct 1255 TGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTAT 1314 Query 215773 CTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCC 215832 || || ||||| |||| |||| | || ||||| |||||||||||||| || |||||||| Sbjct 1315 TTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 1374 Query 215833 ATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGG 215892 ||||||||||||||||| |||||||| || ||||||||||| |||||||| |||||||| Sbjct 1375 GTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGG 1434 Query 215893 TTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGG 215952 |||| | ||||| || ||| ||||| | || |||||||| | |||||| ||| || Sbjct 1435 TTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGG 1494 Query 215953 TTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACA 216000 |||| ||||| ||||| || || || |||||||| |||||||| || Sbjct 1495 TTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 109 bits (120), Expect = 8e-19 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 216144 TCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACG 216203 ||||||||||||| || || |||||| || ||| || | |||||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 216204 TTCTTAACAGAGCAGGACTT-GGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 216262 | | ||| | || |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5010 TCATCAACCGTGCTA-ACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 5068 Query 216263 CCATTAGACTTGGCTGCTGCTGAATCA 216289 || |||||||| ||| || || | ||| Sbjct 5069 CCGTTAGACTTAGCTTCTTCTAACTCA 5095 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 216002 GGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCAC 216061 |||||||||||||| || |||||||||||||| || ||||||||||| | | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 216062 TTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACT 216121 |||||| | || || | || || || |||| ||| ||||| | ||| | |||||| Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 216122 ATGGCGTTCAACCTTAACGGTTTC 216145 ||||| |||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744987170220720