Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq5054 533 2e-146 seq4579 279 6e-70 >seq5054 Length=5139 Score = 533 bits (590), Expect = 2e-146 Identities = 542/701 (77%), Gaps = 4/701 (1%) Strand=Plus/Plus Query 181803 TGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCA 181862 ||| |||| || || | || ||| | || |||||||||| ||||| | ||||| ||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 181863 ACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGA 181921 ||| | | ||||| ||| || |||||| | |||||| | || || || || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 181922 TATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTC 181981 ||||| |||||||| ||||| || | ||||| || | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 181982 TGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGC 182041 ||||||||||| ||| | || ||||| || |||||||||||||||||||| |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 182042 TGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTT 182101 ||| || | || || ||| | |||||||||||||||| |||||| | |||| |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 182102 CCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTAT 182161 ||| | || | | | ||||||||| ||||| |||||| | || | ||| |||||||| Sbjct 1144 CCTTTTAGGTGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTAT 1203 Query 182162 GCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTT 182221 |||||| |||||| ||| || ||||| |||||||| ||||| || || ||||||||||| Sbjct 1204 GCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTT 1263 Query 182222 AGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAAC 182281 ||| || || |||| |||||||| ||||| || | ||||| | || || ||||| || Sbjct 1264 AGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTAC 1323 Query 182282 ATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACAT 182341 ||| |||| ||| | || |||||||||||||||||||| |||||||| || |||||||| Sbjct 1324 ATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACAT 1383 Query 182342 GTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGT 182401 ||| ||||| || |||||||| ||||||||| | || ||| ||||||||||| || || Sbjct 1384 GTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGT 1443 Query 182402 TACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTC-ACAGAACTATGGTTACAAGT 182460 ||| || || | ||||||| || ||||| | || || ||| ||| |||||| | Sbjct 1444 TACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCGTT 1502 Query 182461 TCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCAT 182501 ||||||||||||||||||| || ||||| || || || ||| Sbjct 1503 TCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 138 bits (152), Expect = 1e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 182502 GGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCAC 182561 || ||||| |||||| | |||||||||||||| |||||||||||||| ||||| || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 182562 TTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACG 182621 |||||| | ||||| ||||| || | || || |||||||| || | ||| | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 182622 ATGGCATTCAACCTCAACGGTTTC 182645 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 182644 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATG 182703 ||||||||||||| || | | || || |||||||| | ||||||||||| || Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 182704 TATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 182763 | | ||||||||| | ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 182764 CACTAGATCTTGCTGCTGCTGAGTCAACT 182792 | |||| | ||| || || | ||| || Sbjct 5070 CGTTAGACTTAGCTTCTTCTAACTCAGCT 5098 >seq4579 Length=6132 Score = 279 bits (308), Expect = 6e-70 Identities = 366/502 (73%), Gaps = 10/502 (2%) Strand=Plus/Minus Query 183178 TGGTTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCT 183237 ||||| |||| |||||||||| || | || || || || || || || ||||| Sbjct 4114 TGGTTTGATGATGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 4055 Query 183238 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCT 183297 || | ||||| | || ||||||| |||| | || || ||| ||||||| ||| || Sbjct 4054 GGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACT 3995 Query 183298 TTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTT 183357 |||||||| |||||||| ||||| | ||| |||| || | |||||| |||||| Sbjct 3994 TTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 3935 Query 183358 CTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGG 183417 | || ||||| || || || || || || | | | ||| |||||||| || ||||| Sbjct 3934 TTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGG 3875 Query 183418 GGTCCTGAGTCTCAAGGGGACTTTCA-ACGCTGGTGCCAACTTGGGGGACTCTGGAATTT 183476 |||||||| ||||||| || ||||| ||| ||||| || ||||| || | ||| || Sbjct 3874 GGTCCTGAAGCTCAAGGTGA-TTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 183477 TGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 183536 | | ||| | |||||||| |||| | | ||||||||||||||||| ||||||||| |||| Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 183537 TCGCTTGATTGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 183592 ||| || | ||| | ||||| || || |||||||| ||||| | ||| ||||||| Sbjct 3755 TCG-TTCA---GTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTG 3700 Query 183593 TTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTA 183652 |||| ||| ||||| || |||||| | ||||| || ||||||||||| || | Sbjct 3699 TTTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAA 3640 Query 183653 GTTTCGGGGTAGCAGCAATCTT 183674 | || || || ||||||||||| Sbjct 3639 GCTTTGGTGTTGCAGCAATCTT 3618 Score = 179 bits (198), Expect = 5e-40 Identities = 228/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 183880 ACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTG 183939 || || || |||||||||||||||||||| || || || || || || |||||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 183940 CACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATT 183999 |||||||| ||||| || |||||||| | ||||| ||| | ||| ||||||| || | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 184000 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAA 184059 || | || | || | ||||||||||| || || ||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 184060 GATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCA 184119 || || |||||||| || |||||||| || ||| | | | |||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 184120 TGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCT 184179 ||| | || | || ||||||||||| |||| | || || || || ||||||||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 184180 AGAGGCAATGCTCT 184193 | || || ||||| Sbjct 426 CGTGGTAACGCTCT 413 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 183686 TGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTG 183745 |||| | || ||||| || |||||||| |||||||| ||||| |||||||| ||||||| Sbjct 2138 TGTTTTTCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTG 2079 Query 183746 GTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGT 183805 || | |||| | || || | ||||||| || |||| || ||||| || ||||| | Sbjct 2078 GTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTAT 2019 Query 183806 ATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGA 183865 ||||||||| || || ||||| ||| ||||| | | || || | ||||| | Sbjct 2018 TTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAA 1959 Query 183866 CGTATTCTATGGT 183878 | ||||||||||| Sbjct 1958 CATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611618475178200