Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq5054 482 3e-131 seq4579 264 1e-65 >seq5054 Length=5139 Score = 482 bits (534), Expect = 3e-131 Identities = 534/709 (75%), Gaps = 2/709 (0%) Strand=Plus/Plus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| | ||| | ||||| || | |||||| | || |||||||||||||||| | Sbjct 835 TTTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 894 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTC 164881 ||||| || ||| | || | || || || || || || | || ||||||||||||| Sbjct 895 CATGATTCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 953 Query 164882 CCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACA 164941 | || || ||||| |||||||| |||||||| || |||||||||| | |||||||||| Sbjct 954 CGCCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACA 1013 Query 164942 ACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTA 165001 |||| || || |||||||| || || |||||||||| ||||| ||||||||||| || | Sbjct 1014 ACATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAA 1073 Query 165002 TTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTG 165061 ||||||||||||| | | || |||||||| || ||||||||||||||||| | | | Sbjct 1074 TTTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCG 1133 Query 165062 TCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACC 165121 | | ||||||||| | |||||| ||||||||||||||||| |||||| | || | || Sbjct 1134 TTTGCCACTTCCTTTTAGGTGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCC 1193 Query 165122 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCG 165181 | | ||||||||||| ||||| || || || || || || ||||||||| | | Sbjct 1194 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAG 1253 Query 165182 CAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTA 165241 | || ||| | || || || |||| ||||| ||||| || |||||||| | |||| Sbjct 1254 CTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTA 1313 Query 165242 TCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATC 165301 | || ||||| ||||||| ||| |||| |||||||| || || ||||| |||||||| | Sbjct 1314 TTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 1373 Query 165302 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 165361 ||||||||||| | || |||||||| ||||| ||||| || | |||||||||||||| | Sbjct 1374 CGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACG 1433 Query 165362 GAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACG 165421 | | |||||||| || | |||| || |||||||||| || | ||| | Sbjct 1434 GTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAG 1493 Query 165422 GTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCA 165470 |||| || || |||||||||||||| || ||||| || ||||| || Sbjct 1494 GTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 132 bits (146), Expect = 5e-26 Identities = 118/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 165472 GGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCAC 165531 || ||||| |||||||| || ||||||||||| || |||||||| || ||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 165532 TTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGC-AC 165590 |||||| | || || ||||| ||| | ||||| |||||||||||| | ||| ||| | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCAAC 3747 Query 165591 CATGGCATTCAACCTGAACGGTTTC 165615 |||||||||||| | ||||||||| Sbjct 3748 TATGGCATTCAACTTAAACGGTTTC 3772 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 165661 ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 165720 |||||||| ||| | | ||||||||| | ||||||||||| ||||| ||||||||| Sbjct 4997 ACTTGGGCGGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 5056 Query 165721 GCTCACAACTTCCCCCTCGACCTCGCTGCT 165750 |||||||||||||| | ||| | ||| || Sbjct 5057 GCTCACAACTTCCCGTTAGACTTAGCTTCT 5086 >seq4579 Length=6132 Score = 264 bits (292), Expect = 1e-65 Identities = 361/504 (72%), Gaps = 0/504 (0%) Strand=Plus/Minus Query 166158 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCT 166217 ||||| |||| ||| ||||||||| | ||| |||||||| || || |||||||| Sbjct 4114 TGGTTTGATGATGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 4055 Query 166218 GGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACT 166277 || | | ||| | || ||||||| |||| | || || ||| | ||||| || ||| Sbjct 4054 GGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACT 3995 Query 166278 TTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTTT 166337 || || || |||||||||||||| | || | ||| | || ||| ||||| Sbjct 3994 TTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 3935 Query 166338 CTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGG 166397 | ||||| || ||||| || ||| | | | | | ||| ||||| || || | ||| Sbjct 3934 TTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGG 3875 Query 166398 GGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTT 166457 |||||||| |||||||| |||||| | ||||| || ||||| || | ||||| ||| Sbjct 3874 GGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTT 3815 Query 166458 GTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCT 166517 |||| | |||||||| |||| ||||||||||||||||||| ||||||||||| ||| Sbjct 3814 ATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 3755 Query 166518 CGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTC 166577 ||| |||| | ||||| || || || || ||||| || | ||| |||||||| ||| Sbjct 3754 CGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTTC 3695 Query 166578 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTC 166637 | ||| || || || || || | |||||||| ||||||| || |||||| || Sbjct 3694 ACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTTT 3635 Query 166638 GGGGTCTCAGCAATCTTCCGATTC 166661 || || ||||||||||||| ||| Sbjct 3634 GGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 187 bits (206), Expect = 3e-42 Identities = 234/321 (73%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 166860 ACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTG 166919 || |||||||| | ||||| || ||||| ||| | || || || || | ||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 166920 CATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATT 166979 || ||||| ||| | || |||||||||| ||||| |||| | | || |||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 166980 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAG 167039 ||| | || | ||| | |||||||||||||| ||||| ||||| | | || || || Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 167040 GATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCT 167099 || ||||| |||||||| ||||| || || ||| || | || ||||| ||||| ||| || Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 167100 TGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCT 167159 |||||||| | || ||||| ||||| |||| || ||||||||||| || | ||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 167160 AGAGGTAACGCTCTCTAAATA 167180 | ||||||||||| ||| || Sbjct 426 CGTGGTAACGCTCTATAATTA 406 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 166674 CAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTC 166733 ||||| || || |||||||| | |||||||| || ||||||||||| || ||| || | Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 166734 GGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGAT 166793 |||| ||| || | | ||| || || |||| ||| ||||| ||||| | | | ||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGAT 2011 Query 166794 GGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCA 166853 ||||| || || |||||| |||||| || |||| || | |||||||| ||||| Sbjct 2010 GGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATTCT 1951 Query 166854 ATGGT 166858 ||||| Sbjct 1950 ATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563589363039360