Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq5054 542 3e-149 >seq5054 Length=5139 Score = 542 bits (600), Expect = 3e-149 Identities = 524/668 (78%), Gaps = 4/668 (1%) Strand=Plus/Plus Query 169732 GGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTT 169791 |||||||||||||| | ||||| |||||||| | | ||| || | || ||| | Sbjct 878 GGTTGGTTCGGTGTAATCATGATTCCATGTCTTCTTACTGCAACATCAGTATTCATCATC 937 Query 169792 GCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCA 169851 ||||||||||| ||||| || || ||||||||||| ||| | ||||| || ||||||| Sbjct 938 GCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCT 997 Query 169852 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 169911 | | || ||||||||||| || || ||||| ||||| ||| |||| ||||| |||||| Sbjct 998 CTTCTTTACGGTAACAACATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGT 1057 Query 169912 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGT 169971 || |||||||| || ||||||||||| || || |||| || ||||| |||||||||||| Sbjct 1058 CTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGT 1117 Query 169972 CCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCT-CTGCCTACATGGGTAGACA 170030 ||||| ||| || | | | |||||||||| | || | | ||| |||||||||| | | Sbjct 1118 CCTTACCAACTAATCGTTTGCCACTTCCTTTTAGGTGTATGCTG-CTACATGGGTCGTGA 1176 Query 170031 GTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCC 170090 |||||| |||| | |||||||||||||||||| |||||| ||| || || || ||||| Sbjct 1177 ATGGGAATTATCGTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCC 1236 Query 170091 AGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGA 170150 ||| | || || | |||||||||||||| || || |||| || || || |||||||| Sbjct 1237 AGTAGCTGCTGCTTCAGCTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGA 1296 Query 170151 CGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCA 170210 ||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1297 CGGTATGCCATTAGGTATTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCA 1356 Query 170211 CAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACT 170270 |||||| ||||||||||| ||||| ||| ||| ||||||||| | || || || || | Sbjct 1357 CAACATCCTTATGCACCCGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATT 1416 Query 170271 CTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAA 170330 ||||| || |||||||||||| | || || || ||| ||||| | || ||||| || || Sbjct 1417 ATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAA 1476 Query 170331 CGAGTC-ACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTG 170389 ||| || ||| ||| || ||| ||||| ||||||||||| || ||||||||||| | Sbjct 1477 CGAATCTACA-AACGCAGGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAG 1535 Query 170390 CAGCACAT 170397 | || ||| Sbjct 1536 CTGCTCAT 1543 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 170542 AACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTT 170601 ||||||||||| ||| | ||||| | ||| ||| | || ||||| ||| | Sbjct 4952 AACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACATC 5011 Query 170602 CTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCA 170661 | ||| | || ||| ||||||||||||||||||| |||||||| || ||||||||||| Sbjct 5012 ATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCG 5071 Query 170662 CTTGACTTGGC 170672 | ||||| || Sbjct 5072 TTAGACTTAGC 5082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582774131301600