Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq5054 538 4e-148 >seq5054 Length=5139 Score = 538 bits (596), Expect = 4e-148 Identities = 548/709 (77%), Gaps = 4/709 (1%) Strand=Plus/Minus Query 84249 TGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGT 84308 |||||||| ||||| || ||||| || |||||||||||||| |||||| |||| Sbjct 1542 TGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTTTGTA 1483 Query 84309 GAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCA 84368 || | ||||| || ||||| ||||||| ||| ||||| || | |||||| ||||| ||| Sbjct 1482 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCA 1423 Query 84369 GAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGG 84428 ||||||| | ||||| |||||||||||||| || |||||||| || || ||||||||| Sbjct 1422 GAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAGG 1363 Query 84429 ATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGC 84488 ||||| || || || ||||| || | |||| |||| || || ||||| ||||| | |||| Sbjct 1362 ATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGGC 1303 Query 84489 ATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCT 84548 || || || ||||| |||||||| |||| || || || | ||||||||| || || || Sbjct 1302 ATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGCA 1243 Query 84549 GCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGT 84608 || |||||||| |||||||||||| |||||||||||||||||| | ||| | || | | Sbjct 1242 GCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATAAT 1183 Query 84609 TCCCATTCACGACCCATGTAAGCAA-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTG 84667 |||||||||||||||||||| ||| || |||| | |||||||| | || | ||||| Sbjct 1182 TCCCATTCACGACCCATGTA-GCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGTTG 1124 Query 84668 ATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAA 84727 ||||| ||||| ||||||| ||||||||| | | || ||||||||||| || ||||| Sbjct 1123 GTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAA 1064 Query 84728 ATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTA 84787 || ||||| ||||| ||||| | ||| || || ||||| ||||| |||||||| ||||| Sbjct 1063 GTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCGTA 1004 Query 84788 CATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAAC 84847 | |||||||| | ||||| ||||||||||| || || || ||||| || ||| | | Sbjct 1003 AAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGAT 944 Query 84848 GAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAA 84906 ||| || |||||||| || || || |||| ||| ||| ||||||||| | || | Sbjct 943 GAAAGCGATGATGAATACTGA-TGTTGCAGTAAGAAGACATGGAATCATGATTACACCGA 885 Query 84907 ACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAA 84955 ||||||| | || | |||||| | ||| || || | |||| |||| || Sbjct 884 ACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCAAGCACAAAA 836 Score = 105 bits (116), Expect = 8e-18 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 84117 TTAAATGCCATGGT-GCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGC 84175 || |||||||| || | ||| ||| | ||||| |||||||| || | || |||||||| Sbjct 3759 TTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGAACCAAATACCGATTACCGGCCAAGC 3701 Query 84176 AGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACG 84235 ||| ||||| ||||| | |||||| |||||||| ||||| || |||||||| ||||| Sbjct 3700 AGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATTGGAAGATTAGACG 3641 Query 84236 ACCGAAGTAGCC 84247 ||| ||||| || Sbjct 3640 ACCAAAGTAACC 3629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571201198212120