Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq5054 316 6e-82 >seq5054 Length=5139 Score = 316 bits (350), Expect = 6e-82 Identities = 500/710 (70%), Gaps = 6/710 (1%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 ||||||| ||| |||| ||||| |||||| | || | || |||||||| || | Sbjct 836 TTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 895 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || || | || | || || || || || | || |||||||| || ||| Sbjct 896 ATGATTCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 955 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || ||||| || ||||| || ||||| |||||||| || || | | ||||| ||||| Sbjct 956 CCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAAC 1015 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || ||||| || || || || | |||||||| ||||| || || || ||||| || Sbjct 1016 ATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATT 1075 Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101 |||||||||| | | ||||| ||| |||| || || || || || ||||| || | Sbjct 1076 TGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTT 1135 Query 26102 TTCCACTTCTTAATAGGAGTA-GCAGC-ATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | ||||||| | |||| ||| || || | ||| || | | |||||| |||| | | Sbjct 1136 TGCCACTTCCTTTTAGGTGTATGCTGCTACATG--GGTCGTGAATGGGAATTATCGTTCC 1193 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | |||| ||| | |||||||| |||||| || |||| ||| || | || ||| | Sbjct 1194 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAG 1253 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | || ||||||||||| || |||| ||||| || || || ||||| | |||| Sbjct 1254 CTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTA 1313 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 | || ||||| |||||||| ||| ||||||||||||| || || || || || ||||||| Sbjct 1314 TTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 1373 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 | ||||| ||| ||||||||||| || || ||||| | | ||| |||||||||||| Sbjct 1374 CGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACG 1433 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTC-ACAGAATTAT 26458 | || |||||||| || | || ||||| || || | | || ||| || Sbjct 1434 GTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCA 1492 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACA 26508 || || || || ||||| |||||||| || || ||||| ||||| || Sbjct 1493 GGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146708734049736