Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq5054 390 3e-104 >seq5054 Length=5139 Score = 390 bits (432), Expect = 3e-104 Identities = 517/712 (73%), Gaps = 4/712 (1%) Strand=Plus/Minus Query 36248 ATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTG 36307 |||||| || |||||||| || |||||||||||||| ||||| || || ||| Sbjct 1543 ATGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTTTGT 1484 Query 36308 AGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGC 36367 |||||| ||||||||||||| || | || |||||||| | ||||||||||| Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 36368 AGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAG 36427 || |||||| | ||||| ||||| || |||||||| | ||| |||||||| |||||||| Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 36428 GATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGG 36487 ||| ||||| || || || || || | ||| || || || || ||||||||||| | || Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 36488 CATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGC 36547 |||||| || ||||| ||||| || | ||||| |||||||||||||| | || || Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 36548 TGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTA-A 36606 || || || ||||| ||||| ||| ||||| || | |||||||| | ||| | | Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAAC-GGAACGATA 1185 Query 36607 GTTCCCATTGTCGTCCCAAGTAAGCTG-AGATACCAATGAGAAAGTGGAACACAATGAGT 36665 |||||||| || |||| || ||| | | | ||| | || |||||| | || || ||| Sbjct 1184 ATTCCCATTCACGACCCATGT-AGCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGT 1126 Query 36666 TGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 36725 || || || || |||||||||||||| ||||| | | ||||||||||| ||||||||| Sbjct 1125 TGGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAG 1066 Query 36726 AAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCA 36785 |||||||||||||| ||||| || | ||| || | || || || || |||||||| || Sbjct 1065 AAGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCG 1006 Query 36786 TAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCA 36845 || || | | ||||| || || ||||| |||||||| || || || || || ||||| Sbjct 1005 TAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCG 946 Query 36846 ACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCA 36905 | || || || | ||| ||| ||| || | ||| || ||||| | ||| || Sbjct 945 ATGAAAGCGATGATGAATACTGATGTTGCAGTAAGAAGACATGGAATCATGATTACACCG 886 Query 36906 AACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAAC 36957 ||||| || | || | ||||| | || |||| ||| |||| |||| Sbjct 885 AACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCAAGCACAAAAAC 834 Score = 96.9 bits (106), Expect = 1e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| ||| | ||||||||||| ||||||||||| ||||| |||||||| ||||||| Sbjct 5082 GCTAAGTCTAACGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTA 5023 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | ||||| |||||||| | || | || | || || || ||||| Sbjct 5022 GCACGGTTGATGATGTCCGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACTACTGAT 4963 Query 36093 TGATTGAAGTT 36103 || |||||||| Sbjct 4962 TGGTTGAAGTT 4952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150436285196206