Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq5054 369 1e-97 >seq5054 Length=5139 Score = 369 bits (408), Expect = 1e-97 Identities = 511/710 (72%), Gaps = 4/710 (1%) Strand=Plus/Minus Query 5470 ATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTG 5529 |||||| || |||||||| || || ||||| ||||| ||||| || || ||| Sbjct 1543 ATGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTTTGT 1484 Query 5530 AGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGC 5589 ||| ||||||||||||| || | || |||||||| | || |||||||| Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 5590 AGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAG 5649 || ||| || | ||||| ||||| ||||||||||| | |||||||||||| |||||||| Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 5650 GATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGG 5709 ||| ||||| || || |||||||||| ||| |||||||| ||||| || ||||| | || Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 5710 CATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGC 5769 |||||| || ||| || || |||| ||||| ||||| ||||| | | || || Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 5770 GGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTA-A 5828 || || || ||||| || || || |||||||| ||||| ||||| | | ||| | | Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAAC-GGAACGATA 1185 Query 5829 GTTCCCATTGGCGTCCCAAGTAAGCTGC-GATACCAATAAGGAAGTGGAAGACGACGAGT 5887 |||||||| || |||| || ||| || | ||| | |||||||||| | |||| ||| Sbjct 1184 ATTCCCATTCACGACCCATGT-AGCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGT 1126 Query 5888 TGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAG 5947 ||||| || || || || || | |||||| || | | || |||||||| || || ||| Sbjct 1125 TGGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAG 1066 Query 5948 AAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCA 6007 ||||| | || || ||||| || | |||||||| || ||||| || |||||||| || Sbjct 1065 AAGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCG 1006 Query 6008 TAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCT 6067 || || ||||| |||| || |||||||| || || |||||||| ||||| || ||||| Sbjct 1005 TAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCG 946 Query 6068 ACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCA 6127 | ||| || | || ||| | | ||||| || | || || ||||| | ||||| Sbjct 945 ATGAAAGCGATGATGAATACTGATGTTGCAGTAAGAAGACATGGAATCATGATTACACCG 886 Query 6128 AACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||| || | || | ||||| | || ||||| ||| |||| || Sbjct 885 AACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCAAGCACAAAA 836 Score = 93.3 bits (102), Expect = 1e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 5207 GGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGG 5266 |||||||||||||| || || |||||||||||||||||||| | ||| |||||||| | | Sbjct 5070 GGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTAGCACGGTTGATG 5011 Query 5267 ACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGACTGATTGAAGTT 5325 | || ||||||||| | | | ||| ||||| || ||||| || |||||||| Sbjct 5010 ATGTCCGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACTACTGATTGGTTGAAGTT 4952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152631220892754