Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq5054 387 4e-103 >seq5054 Length=5139 Score = 387 bits (428), Expect = 4e-103 Identities = 516/712 (72%), Gaps = 4/712 (1%) Strand=Plus/Minus Query 25728 ATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTG 25787 |||||| || |||||||| || |||||||||||||| ||||| || || ||| Sbjct 1543 ATGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTTTGT 1484 Query 25788 AGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGC 25847 |||||| ||||||||||||| || | || |||||||| | ||||||||||| Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 25848 AGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAG 25907 || |||||| | ||||| ||||| || |||||||| | ||| |||||||| |||||||| Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 25908 GATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGG 25967 ||| ||||| || || || || || | ||| || || || || ||||||||||| | || Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 25968 CATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGC 26027 |||||| || ||||| ||||| || | ||||| |||||||||||||| | || || Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 26028 TGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTA-A 26086 || || || ||||| ||||| ||| ||||| || | ||| |||| | ||| | | Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAAC-GGAACGATA 1185 Query 26087 GTTCCCATTGTCGTCCCAAGTAAGCTG-AGATGCCGATGAGAAAGTGGAACACAATAAGT 26145 |||||||| || |||| || ||| | | | || | || |||||| | || || ||| Sbjct 1184 ATTCCCATTCACGACCCATGT-AGCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGT 1126 Query 26146 TGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 26205 || || || ||||||||||| ||||| ||||| | | ||||||||||| ||||||||| Sbjct 1125 TGGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAG 1066 Query 26206 AAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCA 26265 |||||||||||||| |||||||| | || || | || ||||| || |||||||| || Sbjct 1065 AAGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCG 1006 Query 26266 TAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCA 26325 || || | | ||||| || || ||||| |||||||| || || || || || ||||| Sbjct 1005 TAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCG 946 Query 26326 ACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCA 26385 | || || || | ||| ||| ||| || | ||| || ||||| | ||| || Sbjct 945 ATGAAAGCGATGATGAATACTGATGTTGCAGTAAGAAGACATGGAATCATGATTACACCG 886 Query 26386 AACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAAC 26437 ||||| || | || | ||||| | || |||| ||| |||| |||| Sbjct 885 AACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCAAGCACAAAAAC 834 Score = 105 bits (116), Expect = 2e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 25446 AGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCC 25505 || ||| |||||||| | ||||||||||| ||||||||||| ||||| |||||||| || Sbjct 5089 AGAAGAAGCTAAGTCTAACGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACC 5030 Query 25506 TAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAAC 25565 ||||| |||||||| | ||||| |||||||| | || | || | || || || Sbjct 5029 TAAGTTAGCACGGTTGATGATGTCCGCCCAAGTGTTTAATACACGACCTTGTGAGTCTAC 4970 Query 25566 GACTGACTGATTGAAGTT 25583 ||||| || |||||||| Sbjct 4969 TACTGATTGGTTGAAGTT 4952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151975299875564