Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4684 82.4 6e-11 >seq4684 Length=5897 Score = 82.4 bits (90), Expect = 6e-11 Identities = 112/149 (75%), Gaps = 12/149 (8%) Strand=Plus/Minus Query 52051 AGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACGTGCGG-AGC-CGTCC 52107 || ||||||||||||| || ||| |||||| || ||||| |||||||| | | ||| | Sbjct 1369 AGGTGGGCGACAAGTTCGCCTCGCGGCACGGC-CAGAAGGGCACGTGCGGCATCACGTAC 1311 Query 52108 TGACCCAGGAGGACATGCCCTTCGACAAGGACGGGG---TGGTGCCCGACCTCATCATCA 52164 ||| ||||||||||||||| || || || || | ||||| ||| ||||| ||| Sbjct 1310 --ACCATGGAGGACATGCCCTT---CACGGCCGAGGGCATCGTGCCGGACATCATCGTCA 1256 Query 52165 ACCCCCACGCCTTTCCATCCAGGATGACC 52193 |||| |||||| | || || | |||||| Sbjct 1255 ACCCGCACGCCATCCCCTCGCGCATGACC 1227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408567107506247