Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq5054 524 8e-144 >seq5054 Length=5139 Score = 524 bits (580), Expect = 8e-144 Identities = 540/701 (77%), Gaps = 4/701 (1%) Strand=Plus/Plus Query 162508 TGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCT 162567 ||| | || ||| ||| || || | || |||||||||||||||| | ||||| || Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 162568 TGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGAT 162627 || | || | ||| || | |||||||| || ||||| || || || ||||| || Sbjct 905 TGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGAC 964 Query 162628 ATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCT 162687 |||||||||||| | ||||| ||| ||||||| ||||| || ||||||||||| || || Sbjct 965 ATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTCA 1024 Query 162688 GGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCA 162747 |||||||| || || | ||| || ||||| |||||||||||||| || || |||||||| Sbjct 1025 GGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGCT 1084 Query 162748 GCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTC 162807 || || | || || ||||| ||||| ||||| |||| |||||| | || | ||||||| Sbjct 1085 GCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTC 1144 Query 162808 CTTATCGGAATCA-CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTAT 162866 ||| | || | | || ||| |||||| | |||||| | || | ||| |||||||| Sbjct 1145 CTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTAT 1203 Query 162867 GCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTT 162926 |||||| |||||| |||||| ||||| || |||||| |||| || | ||||| ||||| Sbjct 1204 GCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTT 1263 Query 162927 GGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTAC 162986 || || || |||| |||||||| ||||| |||| ||||| | |||||||| ||||| Sbjct 1264 AGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTAC 1323 Query 162987 TTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATAT 163046 ||||||| |||| |||| |||||||| |||||||||||||| |||||||| ||||| || Sbjct 1324 ATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACAT 1383 Query 163047 GATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGT 163106 | | || || || |||||||| ||||||||| | || ||||||||||||||| | || Sbjct 1384 GTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGT 1443 Query 163107 TACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTC-ACAGAACTACGGTTATAAGT 163165 |||||| ||| | ||| | ||||| ||||| | || || ||| ||| ||||| | Sbjct 1444 TACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCGTT 1502 Query 163166 TCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCAT 163206 |||| |||||||||||||||||||||||||| ||||||||| Sbjct 1503 TCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 129 bits (142), Expect = 6e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 163207 GGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCAC 163266 || ||||||||||| | |||||||| || || || ||||||||||| |||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 163267 TTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACT 163326 |||||| | ||||| | || || || | || ||||||||||| | ||| | |||||| Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 163327 ATGGCATTCAACCTTAACGGTTTC 163350 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 163349 TCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATA 163408 |||||||||||||||| || || ||| || ||| || | |||||||| || | Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 163409 TCCTTAACAGAGCAGGACTT-GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 163467 || | ||| | || |||| ||||||||||| |||||||||||||| |||||||||||| Sbjct 5010 TCATCAACCGTGCTA-ACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 5068 Query 163468 CCACTTGACCTTGCTGCTGCT 163488 || | ||| | ||| || || Sbjct 5069 CCGTTAGACTTAGCTTCTTCT 5089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553014703415160