Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq5054 473 1e-128 seq4579 239 5e-58 >seq5054 Length=5139 Score = 473 bits (524), Expect = 1e-128 Identities = 529/702 (75%), Gaps = 6/702 (1%) Strand=Plus/Plus Query 162901 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 162960 ||| | ||||| || | ||||| | || ||||||||||||| ||| | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 162961 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 163019 ||| | | ||||| ||| || |||||| |||| ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 163020 CATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTC 163079 ||| || || |||||||| || || | ||||| || | || || |||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 163080 TGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 163139 ||||| ||||| ||| |||| ||||| || |||||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 163140 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTT 163199 || || | || || ||| | |||||||||||||||| |||||| | || | ||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 163200 CCTTATCGGCATCTATGC--ATATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGT 163257 |||| | || | ||||| || ||||| |||||||||||| | || | || |||||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGT 1201 Query 163258 ATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTC 163317 ||||| || |||||| ||| || ||||| || || || || || || || || || ||| Sbjct 1202 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTC 1261 Query 163318 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGC 163377 | || || || |||| |||||||| ||||| |||| |||||| | || || || || Sbjct 1262 TTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGT 1321 Query 163378 ACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCAT 163437 ||||| |||| |||| | || |||||||| |||||||||||||| |||||||| ||||| Sbjct 1322 ACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCAC 1381 Query 163438 ATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTT 163497 ||||| || || |||||||| || ||||| ||| | ||||| || ||||| || | Sbjct 1382 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTA 1441 Query 163498 GTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAG 163557 ||||| || || | ||||||| || ||||||| || || |||| |||||| Sbjct 1442 GTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGT 1501 Query 163558 TTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 163599 || ||||||||||||||||| |||||||| || || || ||| Sbjct 1502 TTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 163600 GGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCAC 163659 || ||||| |||||| | ||||||||||| || |||||||||||| | | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 163660 TTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACC 163719 |||||| | || || ||||| || |||| || ||||| ||||| | || || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 163720 ATGGCATTCAACCTCAACGGTTTC 163743 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 163742 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACG 163801 ||||||||||||| || | | || || |||||||| | ||||||||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 163802 TGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 163861 | | ||||| ||| | ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 163862 C 163862 | Sbjct 5070 C 5070 >seq4579 Length=6132 Score = 239 bits (264), Expect = 5e-58 Identities = 346/486 (71%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 |||||||||||| | ||| || || || || || || ||||| || ||| ||||| | Sbjct 4099 GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTTTTC 4040 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||||||| | || | || || ||| ||||||| ||| ||||||| || ||| Sbjct 4039 CCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACTTTTGTTACATCATGG 3980 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || || |||||| | ||| |||| || | |||||| |||||| | || ||||| || Sbjct 3979 TATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCAGCGGTT 3920 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || || || | | | | ||| |||||||| | ||||||||||||| |||| Sbjct 3919 TCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGGGGTCCTGAAGCTCAA 3860 Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918 || ||||| || ||||| || ||||| || ||||| || | || | |||||| Sbjct 3859 GGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTTATTGCATTACACGGT 3800 Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTA-- 164976 || || | |||||||||||||||| || |||||||| | || ||| ||| ||| Sbjct 3799 GCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGT-TCA---GTAAA 3744 Query 164977 --TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 165034 | ||||| || || |||||||| ||||| | ||| ||||||||||| || || Sbjct 3743 CCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTTCACTTCTGTTTT 3684 Query 165035 CCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 165094 ||| || || ||| | ||||| || ||||||| || ||||| |||||| || ||||| Sbjct 3683 CCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTTTGGTGTTGCAGC 3624 Query 165095 AATCTT 165100 |||||| Sbjct 3623 AATCTT 3618 Score = 224 bits (248), Expect = 1e-53 Identities = 241/319 (76%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 165306 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTT 165365 ||||||||||| |||||||| || ||||| || | || || || ||||| || |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 165366 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATT 165425 || || |||||||| || || ||||||| ||||| |||| || ||||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 165426 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 165485 ||| | || | ||| | |||||||| || ||||| ||| ||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 165486 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCT 165545 || || |||||||| || |||||||| |||||| | |||| |||||||| | |||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 165546 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCT 165605 ||| |||| | || ||||| |||||| ||| | ||||| ||||||||||| ||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 165606 AGAGGCAACGCCCTTTAAT 165624 | || ||||| || |||| Sbjct 426 CGTGGTAACGCTCTATAAT 408 Score = 105 bits (116), Expect = 8e-18 Identities = 142/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 165108 CTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTT 165167 ||||| |||| |||| || || |||||||| | ||||| ||||| |||||||||||| Sbjct 2139 CTGTTTTTCC---AAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTT 2083 Query 165168 GCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACA 165227 || ||| | || || | || || ||| ||||||||| || | || || ||||| ||| Sbjct 2082 GCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACA 2023 Query 165228 TTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAA 165287 |||| || ||||| || || || || || || || | | ||||||| ||| Sbjct 2022 TTATTTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAA 1963 Query 165288 GAGACTTATTCTATGGT 165304 || || ||||||||||| Sbjct 1962 GAAACATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563138220223320