Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3145 131 3e-25 seq1311 118 2e-21 seq611 89.7 1e-12 >seq3145 Length=10667 Score = 131 bits (144), Expect = 3e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| |||||| ||||| |||||| ||| ||||| || ||||||| |||||||| Sbjct 291 TAGAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAG 232 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || ||||||||||| || | ||| ||||| Sbjct 231 AAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCC 172 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||||||||||||||| |||| ||| || Sbjct 171 GAGAAGAAGATGCCCTCCACCGCCGAGAAGGC 140 >seq1311 Length=25178 Score = 118 bits (130), Expect = 2e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||||||||| |||| |||||| || ||| ||||| | || | | ||| || Sbjct 6350 CTCCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCGCGGGCACGCGCCTCCTC 6291 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 | || ||| |||||||| || || |||||||| | |||||||||||| |||||||| Sbjct 6290 CTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCCGCGTGCCAGGGCTCCAT 6231 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCTTGCCGCC 213970 ||||||||| || |||||| | ||||||||| Sbjct 6230 GTAGATGGCGAACGCGCCCTTGCGCTTGCCGCC 6198 Score = 111 bits (122), Expect = 3e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 213525 TCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGG 213584 || |||||||| | ||||||||||||||||||| ||| |||||||||||||||||| Sbjct 7396 TCGGTGTACTCTACGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGC 7337 Query 213585 TGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGC 213644 ||||| ||||| |||| | |||||||| |||||||| ||| |||||||| | | Sbjct 7336 TGGTTGGACTTGCTGTTGCAGGCGTCCTTGTACAGCATGTACGGGTTACCGGTCTCGACC 7277 Query 213645 TGGG 213648 |||| Sbjct 7276 TGGG 7273 >seq611 Length=42128 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/118 (77%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 48108 GCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGA 48167 ||||||||||| ||||||| |||||| ||||| | ||||| || ||||| || || Sbjct 15955 GCAGGTGCTTG---TAGAGCAGGCAGGCGAAGTCGCAGTGCAGCCCCTCGTCGCGAGAGA 15899 Query 48168 TGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAAT 48225 ||||||||||||||||| | || || ||||||| | | || || |||||||| || Sbjct 15898 TGAGCACGTTGGAGAAGGACAGGCCGGGCATGAGCAGGCGCTTCTTCAGCCAGAAGAT 15841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931414739861760