Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3145 127 4e-24 seq1311 95.1 2e-14 seq611 87.8 3e-12 >seq3145 Length=10667 Score = 127 bits (140), Expect = 4e-24 Identities = 130/167 (78%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGG 25933 |||||| ||||| ||||| | || |||||||||||||| ||| || ||||| ||| Sbjct 127 CGAGCGTCTGGTGGCCTTCTCGGCGGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-T 185 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || ||||||||| || ||| ||||||||||||| Sbjct 186 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCA 245 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || | |||||||| || |||| || || ||||||||||||||| Sbjct 246 TCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTCTAC 292 >seq1311 Length=25178 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| ||||| ||||||||||| | | || || || | || ||| |||||| Sbjct 6350 CTCCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCGCGGGCACGCGCCTCCTC 6291 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | ||||| ||| || | ||| |||| || ||||| | ||| |||||||| ||||||| Sbjct 6290 CTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCCGCGTGCCAGGGCTCCAT 6231 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGA 222196 |||| ||| | ||||| |||||| ||| |||||| Sbjct 6230 GTAGATGGCGAACGCGCCCTTGCGCTTGCCGCCGCCCTGA 6191 >seq611 Length=42128 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||| ||| || | ||||||||| |||| ||| ||||||| ||||| Sbjct 15839 CCATCTTCTGGCTGAAGAAGCGCCTGCTCATGCCCGGCCTGTCCTTCTCCAACGTGCTCA 15898 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 || | |||||||| || ||| | || || |||||||||||||||| Sbjct 15899 TCTCTCGCGACGAGGGGCTGCACTGCGACTTCGCCTGCCTGCTCTACA 15946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928727080532160