Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq5054 520 1e-142 seq4579 228 8e-55 >seq5054 Length=5139 Score = 520 bits (576), Expect = 1e-142 Identities = 543/710 (76%), Gaps = 2/710 (0%) Strand=Plus/Plus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 |||||| | ||| | ||||| || | || || || || |||| ||||| || || | Sbjct 835 TTTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 894 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 |||||| ||| |||||| | || ||| ||||| | ||| ||| | |||||||| Sbjct 895 CATGATTCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCC 954 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 || || |||||||| || ||||| ||||||||| | || ||||| | ||||||||||| Sbjct 955 GCCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAA 1014 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 ||| || || ||||| ||||| || | |||||||| || || || ||||||||||| || Sbjct 1015 CATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAAT 1074 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| |||||| | || || ||| | || ||||||||||||||||| || | || Sbjct 1075 TTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGT 1134 Query 8547 TTTCCACTTCCTCCTTGGCGTCT-TTGCTTATATGGGTCGTGAATGGGAACTTTCTTACC 8605 || ||||||||| | || || | ||| || |||||||||||||||||| | || | || Sbjct 1135 TTGCCACTTCCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCC 1193 Query 8606 GCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTG 8665 | | || |||||||| |||||| |||||| ||||| ||||| || || |||||||| | Sbjct 1194 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAG 1253 Query 8666 CTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTA 8725 |||||||| | || || || | || |||||||| ||||| || |||||||| | |||| Sbjct 1254 CTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTA 1313 Query 8726 TCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACC 8785 | || ||||| || |||| ||| | || ||||| ||||||||||||||||| ||||||| Sbjct 1314 TTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 1373 Query 8786 CCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATG 8845 | ||||||||| | |||||||||||||| || || || || | || || || ||||| | Sbjct 1374 CGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACG 1433 Query 8846 GTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATG 8905 ||||| | |||||||| || | | ||||| || || |||| ||| ||| |||| | Sbjct 1434 GTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAG 1493 Query 8906 GCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCAT 8955 | ||| |||||||||||||| || |||||||||||||| || |||||| Sbjct 1494 GTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 9098 TCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGCAGACG 9157 ||||||||||||| || | | ||| |||||| || || | ||||| ||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 9158 TACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACACAACTTCC 9217 | | ||||| || | ||||||||||| |||||||| | ||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 9218 CGCTTGAC 9225 || | ||| Sbjct 5070 CGTTAGAC 5077 >seq4579 Length=6132 Score = 228 bits (252), Expect = 8e-55 Identities = 358/510 (70%), Gaps = 2/510 (0%) Strand=Plus/Minus Query 9811 ATGGTTTGAC-ATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGT 9869 ||||||||| || || |||||||||||| | ||| || || || || || ||||||| Sbjct 4115 ATGGTTTGATGATGCT-GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGT 4057 Query 9870 CTGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTA 9929 | || || | ||||| || ||||||| ||||| | ||||||||| ||||||| || | Sbjct 4056 CAGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAA 3997 Query 9930 CGTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATT 9989 | ||||| || ||||| ||||| || | || | | |||| | || ||| ||| | Sbjct 3996 CTTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACT 3937 Query 9990 TCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTT 10049 || | || || || || ||||| || || | | | | ||| |||||||| | ||| Sbjct 3936 TCTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTT 3877 Query 10050 GGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTT 10109 |||||||||| |||| || |||||| || ||| |||||||| || | ||||| | Sbjct 3876 GGGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCAT 3817 Query 10110 TTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGG 10169 || | || | ||||| || || | |||||| || || ||| | || |||||||| | | Sbjct 3816 TTATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTG 3757 Query 10170 CGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTT 10229 | | | | | | || || || || ||||| || || || | || |||||||||| Sbjct 3756 CTCGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTT 3697 Query 10230 TTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTT 10289 | ||||||||| || |||||| | || || || ||||||||||||| || || | Sbjct 3696 TCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCT 3637 Query 10290 TCGGCGTCGCGGCGATTTTCCGCTTCCTTC 10319 | || || || || || ||||| ||| ||| Sbjct 3636 TTGGTGTTGCAGCAATCTTCCGTTTCATTC 3607 Score = 208 bits (230), Expect = 8e-49 Identities = 237/317 (75%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 10514 ACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTT 10573 ||||| |||||||||||||| || || ||||| | ||||| || ||||| |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 10574 CATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATT 10633 || ||||| ||| | || || ||||||| ||||| |||| ||| ||||||| || | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 10634 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAA 10693 ||| | || | || | |||||||| || || || ||||||||||| | || | ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 10694 GATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCA 10753 || ||||||||||| || ||||| ||||| || | | | || |||||| ||||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 10754 TGGATGGCACCAGTT---GACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTT 10810 |||||||| ||| ||||||||||| ||| | ||||||||||| |||||||| | Sbjct 486 TGGATGGCT---GTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTA 430 Query 10811 CCTAGAGGTAATGCACT 10827 ||| | ||||| || || Sbjct 429 CCTCGTGGTAACGCTCT 413 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 10318 TCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGC 10377 ||| || |||| || |||||||| ||||| | || || ||||| |||||||| ||||| Sbjct 2140 TCTGTTTTTCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGC 2081 Query 10378 TGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACT 10437 |||| | | || | || | ||| || || ||||| | ||||||||||||||| | Sbjct 2080 TGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATT 2021 Query 10438 TTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGA 10497 | | ||||||| || || ||||||||| || || | || || | ||||| Sbjct 2020 ATTTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGA 1961 Query 10498 GACCTATTCGATGGT 10512 || ||||| ||||| Sbjct 1960 AACATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516414542616000