Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq5054 459 3e-124 seq4579 266 4e-66 seq3603 100 3e-16 >seq5054 Length=5139 Score = 459 bits (508), Expect = 3e-124 Identities = 518/689 (75%), Gaps = 6/689 (1%) Strand=Plus/Plus Query 160897 ACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCCTGCTTGCTCGCT 160956 || || ||||| | || | ||||||||||| || | |||||||| || | || || Sbjct 857 ACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCATGTCTTCTTACT 916 Query 160957 GCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCAT 161015 || || || || |||||||| || ||| | | |||||| || || |||||||| || || Sbjct 917 GCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTAT 975 Query 161016 TCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTAT 161075 |||||||| || | ||||| || | || || |||||||| || || ||||||||| | Sbjct 976 CCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTCAGGTGCTGTTGT 1035 Query 161076 CCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGA 161135 || ||||||||||||||||||| ||||||||||| || |||||||| || | | || Sbjct 1036 ACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGA 1095 Query 161136 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCAT 161195 ||||||| | || ||||||||||||| |||||| | || | ||||||||| | || | Sbjct 1096 CGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTCCTTTTAGG--T 1153 Query 161196 CTATGCT--TACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGG 161253 |||||| |||||||||||||| |||||| | || | |||| | || |||||||| ||| Sbjct 1154 GTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTATGCGTCCATGG 1213 Query 161254 ATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCT 161313 || || || ||||| ||||| || ||||| || || || ||| | || || || Sbjct 1214 ATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTTAGTTTACCCA 1273 Query 161314 TTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTAC 161373 |||| |||||||| ||||| || | ||||| | || || || ||||| || |||| | Sbjct 1274 ATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTACATTTAACTTC 1333 Query 161374 ATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTA 161433 ||| | || |||||||| ||||||||||| || |||||||| ||||| ||| | || || Sbjct 1334 ATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACATGTTAGGTGTT 1393 Query 161434 GCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCG 161493 || ||||| ||||| ||||| | ||| ||| ||||||||||| | ||||| || || Sbjct 1394 GCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCT 1453 Query 161494 CTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAA 161553 | | |||||||| || |||||||| || ||| |||||| |||||||||||| Sbjct 1454 TTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTTTCGGTCAAGAA 1513 Query 161554 GAAGAGACCTACAACATCGTTGCTGCCCA 161582 |||||||| |||||||| || ||||| || Sbjct 1514 GAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 125 bits (138), Expect = 8e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 161584 GGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCAC 161643 || ||||| |||||||| || |||||||||||||| ||||||||||| || || | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 161644 TTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 161703 |||||| | ||||||||||| || | || || ||||||||||| | || || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 161704 ATGGCATTCAACCTGAATGGTTTC 161727 |||||||||||| | || |||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 161726 TCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACG 161785 ||||||||||||| || | || || || ||| || | ||||| ||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 161786 TTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCC 161845 | ||||||||||| | || |||||||| ||||||||||| || ||||||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 161846 CTCTTGACCTTGCTGCTGCT 161865 | | ||| | ||| || || Sbjct 5070 CGTTAGACTTAGCTTCTTCT 5089 >seq4579 Length=6132 Score = 266 bits (294), Expect = 4e-66 Identities = 364/508 (72%), Gaps = 8/508 (2%) Strand=Plus/Minus Query 162114 TGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCT 162173 |||||||||| ||| ||||||||| |||||||||||| || || || ||||| Sbjct 4114 TGGTTTGATGATGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 4055 Query 162174 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACT 162233 || | | ||||| || ||||||| |||| || || || ||| ||||||| || ||| Sbjct 4054 GGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACT 3995 Query 162234 TTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTT 162293 || || || ||||||||||| || | || | ||| || | || ||| ||||| Sbjct 3994 TTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 3935 Query 162294 CTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGG 162353 | ||||| || ||||| || ||| | || | | | ||| |||||||| || | ||| Sbjct 3934 TTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGG 3875 Query 162354 GGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTT 162413 |||||||| ||||||| || |||| || ||||| || ||||| || | ||| | ||| Sbjct 3874 GGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTT 3815 Query 162414 GTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCA 162473 | || | ||||| || |||| | || |||||||||||||| ||||||||| | || Sbjct 3814 ATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 3755 Query 162474 CGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGT 162529 || || ||| | ||||| || || |||||||||||||||| ||| |||||||| Sbjct 3754 CG----TTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGT 3699 Query 162530 ATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTC 162589 ||| | |||||| || || ||||| || || ||||| |||||||| || || Sbjct 3698 TTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAG 3639 Query 162590 GTTCGGGGTCGCAGCAATCTTCCGATTC 162617 || || || |||||||||||||| ||| Sbjct 3638 CTTTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 188 bits (208), Expect = 8e-43 Identities = 233/319 (73%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 162816 ACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTG 162875 ||||| ||||| ||||||||||| || || ||| | ||||| ||||| |||||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 162876 CATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATT 162935 || ||||| ||| | || ||||| || | ||||| |||| | |||| |||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 162936 GGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAA 162995 || | || | || | |||||||| ||||| || |||||||| ||||||| || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 162996 GACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCA 163055 |||||||| ||||| || ||||| || || ||| || | | |||||||| |||| || Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 163056 TGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCA 163115 ||| | || |||||||| ||||| ||||| ||||||||||| || || || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 163116 AGAGGCAACGCTCTATGAT 163134 | || |||||||||| || Sbjct 426 CGTGGTAACGCTCTATAAT 408 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 162628 TCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCC 162687 ||||||| || ||||||||||| |||| || || ||||||||||| || || ||| | Sbjct 2132 TCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTT 2073 Query 162688 TTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAG 162747 | |||| ||| || | | ||||||||| || | || || ||||| ||| | | |||| Sbjct 2072 TAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAG 2013 Query 162748 ATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATT 162807 |||| || || |||||||| ||||| || | ||||||| |||||||| |||| Sbjct 2012 ATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATT 1953 Query 162808 CGATGGT 162814 | ||||| Sbjct 1952 CTATGGT 1946 >seq3603 Length=8952 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 157689 ACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 8064 ACGGGATGTAGCGCAGCTTGGTAGCGCATGTGCTTTGGGAGCATAGGGTCGCAGGTTCGA 8005 Query 157749 ATCCTGTCACCCCGA 157763 ||||||||| ||||| Sbjct 8004 ATCCTGTCATCCCGA 7990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547677779889240