Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq5054 399 7e-107 >seq5054 Length=5139 Score = 399 bits (442), Expect = 7e-107 Identities = 519/712 (73%), Gaps = 4/712 (1%) Strand=Plus/Minus Query 18110 ATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTG 18169 |||||| || ||||| || || |||||||||||||| || || || || ||| Sbjct 1543 ATGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTTTGT 1484 Query 18170 AGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGC 18229 ||| || ||||| ||||| | || | || |||||||| | ||||||||||| Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 18230 AGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAG 18289 || |||||| | ||||| ||||| || |||||||| | ||| |||||||| |||||||| Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 18290 GATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGG 18349 ||| ||||| || ||||||||||||| |||||| || || ||||| |||||| | || Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 18350 CATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGC 18409 |||||| || ||||| ||||| || | || ||||| | ||||| | | ||||| Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 18410 TGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTA-A 18468 |||||||| || || ||||||||| ||||| || |||||||||| | ||| | | Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAAC-GGAACGATA 1185 Query 18469 GTTCCCATTGTCGTCCCATGTAAGCTGC-GATGCCGATGAGAAAGTGGAACACAATGAGT 18527 |||||||| || ||||||| ||| || | || | || |||||| | || || ||| Sbjct 1184 ATTCCCATTCACGACCCATGT-AGCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGT 1126 Query 18528 TGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 18587 || || || || |||||||||||||| ||||| | | ||||||||||| ||||||||| Sbjct 1125 TGGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAG 1066 Query 18588 AAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCA 18647 |||||||||||||| |||||||| | || || | || ||||| || |||||||| || Sbjct 1065 AAGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCG 1006 Query 18648 TAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCA 18707 || || | | ||||| || || ||||| |||||||| ||||| || || |||||||| Sbjct 1005 TAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCG 946 Query 18708 ACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCA 18767 | || || || | ||| ||| | ||| || | ||| || ||||| | ||| || Sbjct 945 ATGAAAGCGATGATGAATACTGATGTTGCAGTAAGAAGACATGGAATCATGATTACACCG 886 Query 18768 AACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 ||||| || | ||| | ||||| | || |||| ||| |||| |||| Sbjct 885 AACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCAAGCACAAAAAC 834 Score = 93.3 bits (102), Expect = 1e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 |||||||| |||| ||||||||| ||||| |||||||||||||| ||||| | || | | Sbjct 5085 GAAGCTAAGTCTAACGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAG 5026 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||||| | ||||| | ||| ||||| || || || | ||| | |||| | Sbjct 5025 TTAGCACGGTTGATGATGTCCGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACTACT 4966 Query 17952 GATTGGTTGAAGTTGA 17967 |||||||||||||||| Sbjct 4965 GATTGGTTGAAGTTGA 4950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151300181170066