Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq5054 497 1e-135 seq4579 255 7e-63 seq4701 86.0 8e-12 >seq5054 Length=5139 Score = 497 bits (550), Expect = 1e-135 Identities = 534/702 (76%), Gaps = 6/702 (1%) Strand=Plus/Minus Query 103450 ATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTG 103509 |||||| ||||| |||||||| |||||||| ||||| ||||| |||||| |||| Sbjct 1543 ATGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTTTGT 1484 Query 103510 AGATTCAGTTTCAGTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGC 103569 |||||| ||||||| || ||||| | | || || ||||| | |||||||||||||| Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 103570 ACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAG 103629 | ||| | ||||||||| || || |||||||| || | ||||||||| |||||||| || Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 103630 AATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGG 103689 ||||| || || |||||||| || | |||| |||| || || || |||||||| || || Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 103690 CATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGC 103749 |||| | || ||||| |||||||| || | ||||| || |||||||| || || ||||| Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 103750 CGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAA 103809 || || ||||| ||||| || ||| |||||| || ||||| || | |||| | || || Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATAA 1184 Query 103810 TTCCCACTCACGTCCCATATA--TGCATAGATGCCAATGAGGAAGTGGAATACTACAAGT 103867 |||||| ||||| ||||| || ||||| | || | ||||||||| | || | ||| Sbjct 1183 TTCCCATTCACGACCCATGTAGCAGCATACA--CCTAAAAGGAAGTGGCAAACGATTAGT 1126 Query 103868 TGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAG 103927 ||| |||||||||||||||| | ||| || || | ||| || ||||||||||| || ||| Sbjct 1125 TGGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAG 1066 Query 103928 AAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCG 103987 ||||||||||| || ||||| || | || ||||| ||||| || || |||||||||||| Sbjct 1065 AAGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCG 1006 Query 103988 TACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCT 104047 || | || ||||| | || |||||||| || || ||||| || || || || || || Sbjct 1005 TAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCG 946 Query 104048 ACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACC 104106 | |||||| | |||||| | ||| ||||| | | ||| ||| ||||| | ||||| Sbjct 945 ATGAAAGCGATGATGAATACTGAT-GTTGCAGTAAGAAGACATGGAATCATGATTACACC 887 Query 104107 GAACCAACCAACATAGAGACGGTTGTTTGTCGATGTAACCCA 104148 ||||||||| | || | |||||| | || || |||| ||| Sbjct 886 GAACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCA 845 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 || ||| | ||| | ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 5086 AGAAGCTAAGTCTAACGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAA 5027 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 ||| ||||||| | ||| ||||| ||||| || |||||||| || || | | Sbjct 5026 GTTAGCACGGTTGATGATGTCCGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACTAC 4967 Query 103291 GGACTGGTTGAAGTTGA 103307 || ||||||||||||| Sbjct 4966 TGATTGGTTGAAGTTGA 4950 >seq4579 Length=6132 Score = 255 bits (282), Expect = 7e-63 Identities = 359/499 (72%), Gaps = 4/499 (1%) Strand=Plus/Plus Query 102229 AATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAG 102288 || || |||||||||||||| || ||||||||||||| || || || | ||||| Sbjct 3618 AAGATTGCTGCAACACCAAAGCTTGGAGCAAAGAACCAACCTGATTGACCTAATGGATAA 3677 Query 102289 ATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGA 102348 || || || ||| |||||||| || || | ||||| |||||||| || || ||| Sbjct 3678 ATTAGGAAAACAGAAGTGAAAACAGCAATTGGAGCTGAGAAAGCAATAGCGTTATATGGA 3737 Query 102349 CGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAAT 102408 || | | | | | ||| | || || |||||||||||||||||||| | ||||| Sbjct 3738 CGTAGGTTTACTGAACGAGCAATTTCAAACTGACGAAGCATGAAACCAATTAAACCAAAT 3797 Query 102409 GCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTG-GACCCACCTGACGAAATC 102467 |||||||| | || | ||| ||||| | || ||||| || ||| || || |||||| Sbjct 3798 GCACCGTGTAATGCAATAAATGCCCATAAACCACCAAGCTGACACCAACGTG-TGAAATC 3856 Query 102468 TCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGT 102527 |||||||||||||||||||||| | |||||||| ||| | | | || || || || Sbjct 3857 ACCTTGAGCTTCAGGACCCCAAACAAATAGAAGAGAGTGAGCTAAACTGTTAGGTGGTGT 3916 Query 102528 TGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGT 102587 ||| || || || || | ||| ||| |||||| | |||| || || | || || || Sbjct 3917 TGAAACCGCTGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACCATGAGT 3976 Query 102588 ATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGT 102647 |||||| || ||| |||| || || ||||||| |||||| || | ||| | ||||||| Sbjct 3977 ATACCATGATGTAACAAAAGTTGTACCAGTAAACCAGCCACCTAGTGCAAAATAAGCACA 4036 Query 102648 GGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTC 102707 || ||||| | || || |||||||| || || || || || ||| | || |||||| Sbjct 4037 AGGGAAAAGTAATAAACCTGACCAACCTACGAATACGAAACGGTCTTGACGAAGCCAGTC 4096 Query 102708 ATCCAGGAT-GTCAAACCA 102725 || ||| || |||||||| Sbjct 4097 AT-CAGCATCATCAAACCA 4114 Score = 192 bits (212), Expect = 7e-44 Identities = 231/314 (74%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || ||||| |||||||| || ||||| |||||| ||||| || Sbjct 413 AGAGCGTTACCACGAGGTAATACTTCTTCAGGGAAAACAAAACCTTCATGTGGTTGGTCT 472 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 |||| ||| ||||| | ||||||||| |||| | ||| || |||||||| || Sbjct 473 TGAACAGCCATCCAAGCACGAATACCTTCATTTAATAAAAGGTTTTTCGTGTAGAAAGTT 532 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || || ||||| || || | |||||||| || || |||||||||||||| | | Sbjct 533 TCAAATTCAGGGTCTTCAGCAGCACGAATCTCTTGAGAAACGAAGTCATAAGCACGTAAG 592 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | || | ||| | |||||| || | | |||| ||||| |||||||||| || Sbjct 593 TTTACTGCTAAACCTACAATACCAATAGCAGACATCCATAGACCTGTAACAGGAACTAAT 652 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | ||| ||||| || | ||| | || || || || | |||||||||||| |||||| Sbjct 653 AACATGAAGAAGTGAAGCCAACGTTTGTTTGAGAAAGCTACACCAAAGATTTGTGACCAG 712 Query 102010 AAACGGTTTGCTGT 102023 ||||||||||| || Sbjct 713 AAACGGTTTGCAGT 726 Score = 113 bits (124), Expect = 6e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 102025 ACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGA 102084 ||||| ||||| || ||||| | ||||| | | |||||| ||||||||| || | Sbjct 1946 ACCATAGAATATGTTTCTTCAGCCTGTGTAGGGTTGAATGCACGGAAAGTGTTAGCACCA 2005 Query 102085 TCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCT 102144 |||||||||||| | | ||||| || ||||| ||||||| || || | | | || Sbjct 2006 TCACCATCTTCAAATAATGTGTTTTCTACAGTAGCACCGTGAATAGCACATAATAAAGCA 2065 Query 102145 CCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAG 102204 | || | | ||| |||||||||||||| ||||||||||| | ||||||||||| || Sbjct 2066 GCACCTAAAACACCAGCAACACCCATCATGTGGAATGGGTTTAAAGTCCAGTTATGAAAA 2125 Query 102205 CCCTG 102209 || || Sbjct 2126 CCTTG 2130 >seq4701 Length=5848 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74130 GTGGAGAATAGGAGACTCGAACTCCTGACATCCTGCTTGCAAAGCAGGCGCTCTACCAGC 74189 |||||| ||||| ||||||||||||| |||||| ||||||||||||||||| ||||| Sbjct 2113 GTGGAGCCAAGGAGGATCGAACTCCTGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGC 2054 Query 74190 TGAGCTA 74196 ||||||| Sbjct 2053 TGAGCTA 2047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633433310070120