Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq5054 412 1e-110 >seq5054 Length=5139 Score = 412 bits (456), Expect = 1e-110 Identities = 522/710 (74%), Gaps = 6/710 (1%) Strand=Plus/Minus Query 21747 TGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGT 21806 |||||||| ||||| |||||||||||||| |||||||| || |||||| ||| ||| Sbjct 1542 TGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTT-TGT 1484 Query 21807 -GAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGC 21865 || | | |||||| || ||||| || | || || || || | |||||||||||| Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 21866 AGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAG 21925 |||||| || ||||||||||| || || ||||| | |||||| || || |||||||| Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 21926 AATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGG 21985 || ||||||||||| ||||| || | |||| |||| || || || || || || || || Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 21986 CATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGC 22045 |||| | || || || || || || || | || ||||| | ||| ||||| | ||||| Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 22046 GGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATA-GCTAA 22104 || || ||||| ||||| |||||| |||||| || | ||| |||| || | | ||| Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATAA 1184 Query 22105 GTTCCCACTCTCGTCCCATGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGT 22163 |||||| || || |||||||| ||| | || || | ||||||||| | ||| | ||| Sbjct 1183 -TTCCCATTCACGACCCATGTA-GCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGT 1126 Query 22164 TGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAG 22223 ||| | ||||| ||||| || | |||||| || | | |||||||||||||||||||||| Sbjct 1125 TGGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAG 1066 Query 22224 AAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCA 22283 ||||| || ||||| || ||| | || || || || ||||| || ||||||||||| Sbjct 1065 AAGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCG 1006 Query 22284 TACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCA 22343 || | || || || | || ||||| ||||| ||||||||||| || || || || | Sbjct 1005 TAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCG 946 Query 22344 ACAAAGGCGATAATAAAACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCG 22403 | || ||||| || || | ||| || | ||| || || |||||||| | || ||| Sbjct 945 ATGAAAGCGATGATGAATACTGATGTTGCAGTAAGAAGACATGGAATCATGATTACACCG 886 Query 22404 AACCATCCTACATAAAGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 ||||| || | || | |||||| | ||| || || | ||| | |||||| Sbjct 885 AACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCAAGCACAAAA 836 Score = 84.2 bits (92), Expect = 6e-12 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 21602 GAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTAC 21661 |||||| || |||||||| ||||| || || | || | |||| ||||||||||| | Sbjct 3772 GAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAACCAAATACCGAT 3713 Query 21662 AACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTG 21721 || ||||| ||||| | ||||| || | ||| || || || || ||| ||||| Sbjct 3712 TACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATTG 3653 Query 21722 GAAGATAAGCCGACCAAAATAGCC 21745 |||||| || |||||||| || || Sbjct 3652 GAAGATTAGACGACCAAAGTAACC 3629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146190396465420