Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq5054 497 1e-135 seq4579 221 1e-52 >seq5054 Length=5139 Score = 497 bits (550), Expect = 1e-135 Identities = 541/710 (76%), Gaps = 6/710 (1%) Strand=Plus/Minus Query 124325 TGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGT 124384 || || ||||| |||||||| || ||||||||||| ||||| ||||| ||| ||| Sbjct 1542 TGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTT-TGT 1484 Query 124385 -GACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGC 124443 || || | || |||||||| | ||||| ||| || ||||| | ||||| ||||| || Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 124444 TGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAG 124503 |||||||| || || || || | || || || ||| ||||||||| || ||||| || Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 124504 AATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGG 124563 ||||| ||||| |||||||| |||| ||| ||||| || |||||||| ||||| | ||| Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 124564 CATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGC 124623 |||||| || ||||||||||| || || | |||||| |||||||||||||| | ||||| Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 124624 AGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAG 124683 || |||||| ||||| ||||||||| |||||| |||||||| ||||| | | | |||| Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATAA 1184 Query 124684 TTCCCACTGTCTTCCCATGTATGCTGAA-ATACCAATAAGGAAGTGGAAAATTACCAACT 124742 |||||| | | |||||||| || | | | ||| | |||||||||| ||| | | | Sbjct 1183 TTCCCATTCACGACCCATGTA-GCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGTT 1125 Query 124743 GATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGA 124802 | ||||||||||| ||||| |||||||| || | || || |||||||| |||||||||| Sbjct 1124 GGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGA 1065 Query 124803 AGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCAT 124862 |||| || ||||||||||| || | ||| ||||| ||||| || || ||||||||||| | Sbjct 1064 AGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCGT 1005 Query 124863 ATAAGAA-AGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCA 124921 | ||||| |||||| | |||||||| | ||| || ||||| || || || || || || Sbjct 1004 A-AAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCG 946 Query 124922 ATAAATGCAACGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCA 124981 || || || | |||||| || || ||| || || | ||||||||||| | ||||| Sbjct 945 ATGAAAGCGATGATGAATACTGATGTTGCAGTAAGAAGACATGGAATCATGATTACACCG 886 Query 124982 AACCAACCAACATAAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 |||||||| | || | | ||| | ||||| || | ||| |||| || Sbjct 885 AACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCAAGCACAAAA 836 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124180 GAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCATACACATAC 124239 |||||| || |||||||||||||| || | | ||| | || || ||||| | || | Sbjct 3772 GAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAACCAAATACCGAT 3713 Query 124240 AACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATGAAGCATACTG 124299 || || || | |||| ||||||||| | | ||||||||||||||||| || || Sbjct 3712 TACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATTG 3653 Query 124300 GAAGATAAGACGACCAAAGTAACC 124323 |||||| ||||||||||||||||| Sbjct 3652 GAAGATTAGACGACCAAAGTAACC 3629 >seq4579 Length=6132 Score = 221 bits (244), Expect = 1e-52 Identities = 350/502 (70%), Gaps = 0/502 (0%) Strand=Plus/Plus Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTG 123464 |||| ||||||||||| ||||| || ||| || |||||||||| ||||||| || Sbjct 3613 AACGGAAGATTGCTGCAACACCAAAGCTTGGAGCAAAGAACCAACCTGATTGACCTAATG 3672 Query 123465 GATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGT 123524 |||| || || || | |||||| || || || ||| ||||| || | ||||| | Sbjct 3673 GATAAATTAGGAAAACAGAAGTGAAAACAGCAATTGGAGCTGAGAAAGCAATAGCGTTAT 3732 Query 123525 AAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 | || | | | ||| | || || ||||| || | ||||||||||| || | | Sbjct 3733 ATGGACGTAGGTTTACTGAACGAGCAATTTCAAACTGACGAAGCATGAAACCAATTAAAC 3792 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 |||| | || |||||||| | ||| ||||| ||| || || || ||||||| || Sbjct 3793 CAAATGCACCGTGTAATGCAATAAATGCCCATAAACCACCAAGCTGACACCAACGTGTGA 3852 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAG 123704 | ||||| |||||||| ||||||| || | ||| ||| | | || | | Sbjct 3853 AATCACCTTGAGCTTCAGGACCCCAAACAAATAGAAGAGAGTGAGCTAAACTGTTAGGTG 3912 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 |||| || || ||||| ||||||||||| || || | || |||| || | ||||| Sbjct 3913 GTGTTGAAACCGCTGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACCAT 3972 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 | ||||||||||||||||| || || || || ||||| ||||| | || | ||| | Sbjct 3973 GAGTATACCATGATGTAACAAAAGTTGTACCAGTAAACCAGCCACCTAGTGCAAAATAAG 4032 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 ||||||| | |||||| | ||| ||||| |||| |||||| ||||| ||| | || Sbjct 4033 CACAAGGGAAAAGTAATAAACCTGACCAACCTACGAATACGAAACGGTCTTGACGAAGCC 4092 Query 123885 AGTCGTCAAGAACATCAAACCA 123906 |||| ||| | |||||||||| Sbjct 4093 AGTCATCAGCATCATCAAACCA 4114 Score = 201 bits (222), Expect = 1e-46 Identities = 238/321 (74%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 ||| || |||||||| | ||||| |||||||| ||||| |||||| ||||| ||||| Sbjct 409 TTATAGAGCGTTACCACGAGGTAATACTTCTTCAGGGAAAACAAAACCTTCATGTGGTTG 468 Query 122926 GTC---AACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATA 122982 ||| ||||| |||||| || | || |||||||| | | || ||| ||||| || Sbjct 469 GTCTTGAACAGC---CATCCAAGCACGAATACCTTCATTTAATAAAAGGTTTTTCGTGTA 525 Query 122983 GAAAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGC 123042 |||||| || || || |||||||| || || | ||||||||||| || ||||| || || Sbjct 526 GAAAGTTTCAAATTCAGGGTCTTCAGCAGCACGAATCTCTTGAGAAACGAAGTCATAAGC 585 Query 123043 TCTGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGG 123102 | | ||| | ||||| |||||| ||||| |||| || |||| | ||| | ||||| Sbjct 586 ACGTAAGTTTACTGCTAAACCTACAATACCAATAGCAGACATCCATAGACCTGTAACAGG 645 Query 123103 AACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTG 123162 ||| || ||||| | |||||| | | | |||||| || || || | |||||| || || Sbjct 646 AACTAATAACATGAAGAAGTGAAGCCAACGTTTGTTTGAGAAAGCTACACCAAAGATTTG 705 Query 123163 TGACCAGAATCTGTTCGCTGT 123183 ||||||||| | ||| || || Sbjct 706 TGACCAGAAACGGTTTGCAGT 726 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/204 (69%), Gaps = 21/204 (10%) Strand=Plus/Plus Query 123187 CATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGCTCTGAAAGTTGTAGATTGAAT 123246 |||| ||| |||||||| |||||||||| | |||||| | |||||| ||| Sbjct 1948 CATAGAATATGTTTCTTCAGCCTGTGTAGGGTTGAATGCACGGAAAGTGTTAGC------ 2001 Query 123247 CTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGTGTTCTGCACTGTTGCACCATG 123306 ||| ||| || ||||| | |||||||| | || || ||||| || Sbjct 2002 ---ACCATCACCAT------------CTTCAAATAATGTGTTTTCTACAGTAGCACCGTG 2046 Query 123307 AATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACACCCATCATGTGAAATGGATT 123366 ||| ||||||| ||| || |||||| | || ||||||||||||||||| ||||| || Sbjct 2047 AATAGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATGTGGAATGGGTT 2106 Query 123367 CAATGTAATGTTGTGGAAACCTTG 123390 || || ||| || |||||||| Sbjct 2107 TAAAGTCCAGTTATGAAAACCTTG 2130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578925019190280