Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5054 536 2e-147 seq4579 244 1e-59 >seq5054 Length=5139 Score = 536 bits (594), Expect = 2e-147 Identities = 551/713 (77%), Gaps = 8/713 (1%) Strand=Plus/Minus Query 27009 ATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTG 27068 ||| || || || |||||||| |||||||||||||||||||| ||||| ||| || Sbjct 1543 ATGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTT-TG 1485 Query 27069 T-GACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAG 27127 | || || ||||||| || ||||||| | || || ||||| | |||||||||| Sbjct 1484 TAGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAG 1425 Query 27128 CAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAA 27187 ||||||| | || ||||| ||||| ||||||||||| | |||||||||||||||||||| Sbjct 1424 CAGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAA 1365 Query 27188 GGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAG 27247 |||| ||||| || || |||||||| | |||| ||||||| ||||| || ||||| | | Sbjct 1364 GGATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATG 1305 Query 27248 GCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAG 27307 ||||| | || ||||| |||||||| |||| || || || | |||||| || |||| Sbjct 1304 GCATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAG 1245 Query 27308 CAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGA 27367 |||| |||||||| || || || ||| |||||||||||||||||||||||| | || | Sbjct 1244 CAGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATA 1185 Query 27368 GTTCCCACTCACGTCCCATATA--AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAG 27425 |||||| ||||| ||||| || |||||| | || | |||||||||| | || | || Sbjct 1184 ATTCCCATTCACGACCCATGTAGCAGCATACA--CCTAAAAGGAAGTGGCAAACGATTAG 1127 Query 27426 TTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTA 27485 |||| |||||||||||||||| ||||| || || | || || |||||||| |||||||| Sbjct 1126 TTGGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTA 1067 Query 27486 GAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCC 27545 |||||| |||||||| || || ||| |||| ||||| ||||| ||||| |||||||| || Sbjct 1066 GAAGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACC 1007 Query 27546 ATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGC 27605 || | ||| ||||| | ||| |||||||| ||||| || || || || || || || || Sbjct 1006 GTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGC 947 Query 27606 GATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACAC 27664 |||||| |||| ||||| | || ||||| | | || ||| ||||| | ||||| Sbjct 946 GATGAAAGCGATGATGAATACTGA-TGTTGCAGTAAGAAGACATGGAATCATGATTACAC 888 Query 27665 CGAACCAACCAACATACAAACGGTTGTTAGTTGATGTCACCCACTCACAGAAA 27717 |||||||||| | || |||||||| | |||||| || | ||| |||| ||| Sbjct 887 CGAACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCAAGCACAAAAA 835 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26865 GAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAAC 26924 ||||||||| | ||||| ||||| || |||| ||| | || |||||||| || || | Sbjct 3772 GAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAACCAAATACCGAT 3713 Query 26925 AACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTG 26984 || ||||| ||||| | ||||||||| || ||||| ||||||||||||||||| ||||| Sbjct 3712 TACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATTG 3653 Query 26985 GAAGATCAAACGACCGAAGTAGCC 27008 |||||| | |||||| ||||| || Sbjct 3652 GAAGATTAGACGACCAAAGTAACC 3629 >seq4579 Length=6132 Score = 244 bits (270), Expect = 1e-59 Identities = 364/511 (71%), Gaps = 4/511 (1%) Strand=Plus/Plus Query 23899 GAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTC 23958 ||| ||| | ||| || || |||||||| || || || |||||||||||| ||| || | Sbjct 3607 GAATGAAACGGAAGATTGCTGCAACACCAAAGCTTGGAGCAAAGAACCAACCTGATTGAC 3666 Query 23959 CCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCG 24018 | || ||||| || ||||| ||||| ||| |||||||| ||| | || |||||||| | Sbjct 3667 CTAATGGATAAATTAGGAAAACAGAAGTGAAAACAGCAATTGGAGCTGAGAAAGCAATAG 3726 Query 24019 CATTGTAGGGACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTA 24078 | || || ||||| | | | ||| || | |||||||||||| | ||| ||||| | Sbjct 3727 CGTTATATGGACGTAGGTTTACTGAACGAGCAATTTCAAACTGACGAAGCATGAAACCAA 3786 Query 24079 TAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACC 24138 | | |||| |||||||| | |||| ||| | ||| | || ||||| || ||| | Sbjct 3787 TTAAACCAAATGCACCGTGTAATGCAATAAATGCCCATAAACCACCAAGCTGACACCAAC 3846 Query 24139 GT-TGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCG 24197 || ||||| || ||||||| ||||||||||||| | |||||||| ||| | | | | Sbjct 3847 GTGTGAAA-TCACCTTGAGCTTCAGGACCCCAAACAAATAGAAGAGAGTGAGCTAAACTG 3905 Query 24198 TCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCA 24257 | || || || || || ||||| || | |||||| ||| || | || ||| |||| Sbjct 3906 TTAGGTGGTGTTGAAACCGCTGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCT 3965 Query 24258 AGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCA 24317 | ||||| || ||||| |||||||||| ||| ||||||| ||| || || | ||| Sbjct 3966 AAACCATGAGTATACCATGATGTAACAAAAGTTGTACCAGTAAACCAGCCACCTAGTGCA 4025 Query 24318 AGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGT 24377 | ||||||| || | ||||| | || |||||||| || || || || || || | Sbjct 4026 AAATAAGCACAAGGGAAAAGTAATAAACCTGACCAACCTACGAATACGAAACGGTCTTGA 4085 Query 24378 TTAACCCAGTCGTCCAAGAT-GTCAAACCAT 24407 || |||||| | || || ||||||||| Sbjct 4086 CGAAGCCAGTCAT-CAGCATCATCAAACCAT 4115 Score = 159 bits (176), Expect = 5e-34 Identities = 200/273 (73%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 23435 TTCGTGTGGTTGGTC---AATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAAT 23491 ||| ||||||||||| || || |||||| |||| | || | || || |||| Sbjct 457 TTCATGTGGTTGGTCTTGAACAG---CCATCCAAGCACGAATACCTTCATTTAATAAAAG 513 Query 23492 ATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCAC 23551 |||||||||||||| || ||| | | |||||||||||||||||||||||| || Sbjct 514 GTTTTTCGTGTAGAAAGTTTCAAATTCAGGGTCTTCAGCAGCACGAATCTCTTGAGAAAC 573 Query 23552 AAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAG 23611 || ||||||||||| | || | || | || | || ||||||| ||| | ||| || Sbjct 574 GAAGTCATAAGCACGTAAGTTTACTGCTAAACCTACAATACCAATAGCAGACATCCATAG 633 Query 23612 ACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAAC 23671 ||| | |||||||| || ||||| |||||||| | |||||| || || || || || Sbjct 634 ACCTGTAACAGGAACTAATAACATGAAGAAGTGAAGCCAACGTTTGTTTGAGAAAGCTAC 693 Query 23672 CCCGAAGATTTGTGACCAAAAACGATTTGCTGT 23704 || |||||||||||||| ||||| ||||| || Sbjct 694 ACCAAAGATTTGTGACCAGAAACGGTTTGCAGT 726 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23706 ACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGT 23765 ||||| ||||| || || || |||| || | | ||| || |||||||| || Sbjct 1946 ACCATAGAATATGTTTCTTCAGCCTGTGTAGGGTTGAATGCACGGAAAGTGTTAGCACCA 2005 Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825 || ||||||||| | | ||| || || |||||| | || ||||||||| | | | || Sbjct 2006 TCACCATCTTCAAATAATGTGTTTTCTACAGTAGCACCGTGAATAGCACATAATAAAGCA 2065 Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885 | || | | ||||||||| |||||||| ||||| ||||| | |||||||||||||| Sbjct 2066 GCACCTAAAACACCAGCAACACCCATCATGTGGAATGGGTTTAAAGTCCAGTTATGAAAA 2125 Query 23886 CCCTGGAGGAAGAGA 23900 || |||| || ||| Sbjct 2126 CCTTGGAAAAACAGA 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665410056903480