Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq5054 491 6e-134 >seq5054 Length=5139 Score = 491 bits (544), Expect = 6e-134 Identities = 514/670 (77%), Gaps = 4/670 (1%) Strand=Plus/Minus Query 8166 ATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTG 8225 ||||||||| ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 1543 ATGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTTTGT 1484 Query 8226 AGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGC 8285 ||| || | ||||||||| || | ||||| ||| || |||||||| |||||||||||||| Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 8286 ACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAG 8345 | ||| | ||| ||||| || | ||| || || ||| ||| ||||| || |||||||| Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 8346 AATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGG 8405 ||||| ||||| ||||||||||||| |||||||||||| ||||| |||||||||| || Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 8406 CATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGC 8465 ||| || || ||||||||||| || || | ||| || |||||||| || || ||||||| Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 8466 AGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAA 8525 || ||||||||| || || ||| ||||||||| | ||||||||| ||| | ||||| Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATAA 1184 Query 8526 CTCCCACTGTCTACCCATGTAAGCAGAA-ATTCCAATAAGGAAGTGGAAGATAACCAACT 8584 ||||| | | ||||||||| |||| | | || | |||||||||| | | | | | Sbjct 1183 TTCCCATTCACGACCCATGTA-GCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGTT 1125 Query 8585 GATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGA 8644 | || ||||| |||||||| ||||| || ||||| | |||||||||||||| || |||| Sbjct 1124 GGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGA 1065 Query 8645 AGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCAT 8704 |||| | || |||||||| |||| ||| || |||||||| || || |||||||| || | Sbjct 1064 AGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCGT 1005 Query 8705 ACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAA 8764 | | | ||||||| ||| |||||||| ||||| ||||| || || || |||||||| | Sbjct 1004 AAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGA 945 Query 8765 TAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAG-CAAGGAATCATTAGAACTCCA 8823 | || || | ||| || | | |||| ||| ||| || |||||||| | || || Sbjct 944 TGAAAGCGATGATGAATACTGATGTTGCAG-TAAGAAGACATGGAATCATGATTACACCG 886 Query 8824 AACCAACCGA 8833 |||||||||| Sbjct 885 AACCAACCGA 876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615784347139080