Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq5054 518 4e-142 seq4579 219 5e-52 seq7814 100 3e-16 >seq5054 Length=5139 Score = 518 bits (574), Expect = 4e-142 Identities = 528/684 (77%), Gaps = 6/684 (1%) Strand=Plus/Plus Query 165796 AACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTGTTGGCAGCAACT 165855 |||||| | || |||||||||| ||| | ||||||||| ||| | | ||||| Sbjct 863 AACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCATGTCTTCTTACTGCAAC- 921 Query 165856 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 165914 ||| | |||||| |||| |||||||||||||| || || |||||||| || |||||||| Sbjct 922 ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGA 981 Query 165915 ACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 165974 ||| || | |||||||| | || ||||||||||| || || ||||| ||||| || | Sbjct 982 ACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTCAGGTGCTGTTGTACCAAC 1041 Query 165975 TTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATG 166034 ||| ||||| || ||||| |||||||| || || |||||||| || || | |||||||| Sbjct 1042 TTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAATG 1101 Query 166035 GCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGC 166094 | | |||||||||||||||| |||||| | || | ||||||||| | || | ||||| Sbjct 1102 GTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTCCTTTTAGG--TGTATGC 1159 Query 166095 --CTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGT 166152 ||||||||||||||| |||||| | || | |||| |||||||||||||||||||| | Sbjct 1160 TGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTATGCGTCCATGGATCGCT 1219 Query 166153 GTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGT 166212 |||||||||||||| ||||| |||||||| || |||||| |||| || || |||| Sbjct 1220 GTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTTAGTTTACCCAATCGGC 1279 Query 166213 CAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTG 166272 |||||| ||||| || | |||||| | || || ||||| ||||| |||| |||| | Sbjct 1280 CAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTACATTTAACTTCATGATC 1339 Query 166273 GTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGG 166332 || ||||||||||||||||| || || ||||| || ||||| ||| | || |||||||| Sbjct 1340 GTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACATGTTAGGTGTTGCTGGT 1399 Query 166333 GTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTT 166392 ||||||||||| || || |||||||||||| || |||||||| ||| | | Sbjct 1400 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 1459 Query 166393 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 166452 | || || ||||||| |||||| |||| |||||| ||||| ||||||||||| Sbjct 1460 CGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTTTCGGTCAAGAAGAAGAG 1519 Query 166453 ACATACAACATCGTAGCCGCTCAT 166476 || |||||||| ||||| |||||| Sbjct 1520 ACTTACAACATTGTAGCTGCTCAT 1543 Score = 143 bits (158), Expect = 3e-29 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 166477 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCAC 166536 |||||||| |||||| | ||||||||||||||||||||||||||||| || || || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 166537 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 166596 |||||| | ||||| ||||| || |||| || |||||||| || | || | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 166597 ATGGCATTCAACCTGAACGGTTTC 166620 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 166619 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 166678 ||||||||||||| || | | || || |||||||| || ||||| ||||| || Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 166679 TTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 166738 | | ||||| ||| | ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 166739 CCCTCGACCTCGCTGCTGCT 166758 | | ||| | ||| || || Sbjct 5070 CGTTAGACTTAGCTTCTTCT 5089 >seq4579 Length=6132 Score = 219 bits (242), Expect = 5e-52 Identities = 356/509 (70%), Gaps = 10/509 (2%) Strand=Plus/Minus Query 167011 TGGTTTGATG-TCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTC 167069 |||||||||| | || |||||||||||| || ||||| || || || || ||||| Sbjct 4114 TGGTTTGATGATGCT-GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 167070 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTAC 167129 || | | ||||| || ||||||| |||| | || || ||| ||||||| || || Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 167130 TTTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAACTT 167189 ||| || || |||||||||||||| | || | ||| | || ||| ||||| Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 167190 TCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATG 167249 | ||||| || ||| || ||| | | | | | ||| ||| | || || | || Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 167250 GGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTT 167309 |||||||||| ||||||| |||||| | ||| || ||||| || | ||||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 167310 TGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 167369 | | || | ||||| || |||| | | ||||||||||||||||| ||||||||| |||| Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 167370 TCGCCTGATTGGTA----TCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG 167425 || | | ||| | ||||| || || |||||||||||||| | ||| ||||||| Sbjct 3755 TC----GTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTG 3700 Query 167426 TCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGT 167485 | ||| | |||||||| | ||||| | |||||| | ||||||||||| || Sbjct 3699 TTTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAA 3640 Query 167486 CCTTCGGAGTCGCCGCCATCTTCCGATTC 167514 ||| || || || || |||||||| ||| Sbjct 3639 GCTTTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 199 bits (220), Expect = 4e-46 Identities = 235/318 (74%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 167713 ACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTT 167772 || |||||||| |||||||| || ||||| || | |||||| |||||||| |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 167773 CATTTCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATT 167832 || ||||| |||||||| ||||| |||| || || |||| || | ||||| || | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 167833 GGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAG 167892 ||| | || | || | |||||||| || ||||||||||||||||| | || || || Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 167893 GATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCA 167952 || || || |||||||||||||| || |||||| | | | ||||||||| |||| || Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 167953 TGGTTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCA 168012 ||| | || | || ||||| ||||| ||||| ||||| || ||||| | || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 168013 CGAGGCAACGCACTATAA 168030 || || ||||| |||||| Sbjct 426 CGTGGTAACGCTCTATAA 409 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 167525 TCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCC 167584 ||||||| || || |||||||| | || ||||| || ||||||||||| || ||| | Sbjct 2132 TCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTT 2073 Query 167585 TGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAG 167644 | |||| ||| || | | ||| || || |||| ||| ||||| || || || | ||||| Sbjct 2072 TAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAG 2013 Query 167645 ATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATT 167704 ||||||| || |||||||| |||||| | |||| |||| ||||| || |||| Sbjct 2012 ATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATT 1953 Query 167705 CAATGGT 167711 | ||||| Sbjct 1952 CTATGGT 1946 >seq7814 Length=1945 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 || |||||||||||| || ||||| |||| ||||||| ||||||||||||||||||| || Sbjct 169 TCTTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 228 Query 18189 CTACCTGGGGAGT 18201 ||||||||||||| Sbjct 229 CTACCTGGGGAGT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561176868831600