Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq601 102 1e-16 seq300 100 4e-16 seq805 98.7 1e-15 seq143 98.7 1e-15 seq1466 95.1 2e-14 seq3434 91.5 2e-13 >seq601 Length=42509 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || |||||||| ||||| ||||| || Sbjct 41623 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCG 41682 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| |||| |||||||||| || ||||| || Sbjct 41683 GACACTATCGAGAACGTCAAGTCCAAGATTCAGGACAAGGAGGG 41726 >seq300 Length=58156 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||||| || || ||||| |||| || || || || | || || || ||| Sbjct 42930 AAGATGAAGGAGACGGCTGAGGCTTTCCTGGGCAAGACCGTTAAGCACGCTGTGGTCACT 42871 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || | || || ||||| || ||||| || | | ||| | Sbjct 42870 GTGCCGGCCTACTTCAACGACGCCCAGCGCCAGGCCACTAAGGATGCGGGAACCATTTCC 42811 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| || | |||||||| || || || || || || || || ||||| ||| Sbjct 42810 GGCCTTAACGTGGTTCGCATTATCAACGAGCCTACCGCCGCCGCTATCGCCTATGGCCTG 42751 Query 195842 GACAAGAA 195849 |||||||| Sbjct 42750 GACAAGAA 42743 >seq805 Length=36125 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 196718 TTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAA 196777 ||||| || || || || || || || ||||| | |||||||||||| | | ||||| Sbjct 3184 TTCGACATCGATGCCAACGGTATCCTCAACGTGTCCGCTGAGGACAAGACCACCGGCAAC 3125 Query 196778 TCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGT 196837 | ||||| ||| ||||| |||||||| || || || |||||||| ||||| || Sbjct 3124 AAGAACAAGATCACGATCACCAACGACAAGGGCCGCCTGTCCAAGGAGGAGATTGAGCGC 3065 Query 196838 ATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 ||||| || || || || ||||||| || || |||||| Sbjct 3064 ATGGTCCAGGAGGCCGAGAAGTACAAGGCCGACGACGAG 3026 >seq143 Length=80130 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || ||||||||||||||||| ||||| || Sbjct 56532 ATGCAAATCTTCGTTAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCG 56591 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || | || |||||||||| || ||||| || Sbjct 56592 GACACCATCGAGAATGTGAAGTCCAAGATTCAGGACAAGGAGGG 56635 >seq1466 Length=22910 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||| || || ||||||| |||| || || || || | || || || || Sbjct 4780 AAGATGAAGGAAACCGCCGAATCTTATCTGGGCAAGACGGTCAATCACGCGGTCGTAACG 4839 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| ||| | || || ||||| || |||||||| | | || || Sbjct 4840 GTTCCGGCCTACTTCAATGACGCCCAGCGCCAGGCCACCAAGGACGCAGGGACCATCGCT 4899 Query 195782 GGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || ||| ||| || | || ||||| || ||||| || || || || || || || | Sbjct 4900 GGGCTCAAC-GTCGTACGGATCATCAACGAGCCAACCGCCGCCGCCATCGCGTACGGCAT 4958 Query 195841 GGACAAGAA 195849 ||||||||| Sbjct 4959 GGACAAGAA 4967 >seq3434 Length=9578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||| || || |||| | | | || || || || | | | || ||||| || Sbjct 5735 AAGATGAAGGAAACCGCCAAATCGTACCTCGGCAAGACGGTTACACACGCGGTTGTAACG 5676 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| ||| | || || ||||| || |||||||| | | || || Sbjct 5675 GTTCCGGCGTACTTCAATGACGCCCAGCGCCAGGCCACCAAGGACGCAGGGACCATCGCC 5616 Query 195782 GGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || || |||| || | || ||||| || ||||| || || || || || || || | Sbjct 5615 GGGCTCAA-TGTCGTACGGATCATCAACGAGCCAACCGCCGCCGCCATCGCGTACGGCAT 5557 Query 195841 GGACAAGAA 195849 ||||||||| Sbjct 5556 GGACAAGAA 5548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657779024164080