Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq5054 412 1e-110 >seq5054 Length=5139 Score = 412 bits (456), Expect = 1e-110 Identities = 522/710 (74%), Gaps = 6/710 (1%) Strand=Plus/Plus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 |||||| | ||| | || || ||| | |||||| | || | || |||||||| || | Sbjct 836 TTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 895 Query 41294 ATGATTCCGTGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCA 41353 |||||||| || || ||| | || ||| | || || ||||| || | | || || Sbjct 896 ATGATTCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 955 Query 41354 CCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAAC 41413 || || ||||||||||| ||||| ||||| || | || || || | || ||||||||| Sbjct 956 CCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAAC 1015 Query 41414 ATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATT 41473 || || ||||| || || || || | ||| || ||||| || ||||||||||||||| Sbjct 1016 ATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATT 1075 Query 41474 TGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTA 41533 |||||||||||| | | || |||||| | || ||||| ||||| | |||||| | ||| Sbjct 1076 TGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTT 1135 Query 41534 TTCCACTTCCTCATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGAACTTAGC-TATC 41591 | ||||||||| | || || | ||| |||||||| || || |||||| ||| | | | Sbjct 1136 TGCCACTTCCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAA-TTATCGTTCC 1193 Query 41592 GACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTG 41651 | |||| ||| | || |||||| |||||| ||||| ||||| || || ||||| | | Sbjct 1194 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAG 1253 Query 41652 CTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGA 41711 |||| ||| | ||||| || | || || || || || || || | |||||| || || | Sbjct 1254 CTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTA 1313 Query 41712 TATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATC 41771 | || || || || |||| |||| | || ||||| ||||||||||| || |||||||| | Sbjct 1314 TTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 1373 Query 41772 CTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACG 41831 | || |||||| | ||||| || || ||||||||||| || |||||||||||||||| Sbjct 1374 CGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACG 1433 Query 41832 GTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTC-ACAGAACTAT 41890 || | || || || || | || ||||| || |||||| | | || ||| ||| Sbjct 1434 GTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCA 1492 Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCA 41940 |||||| || |||||||| |||||||||||||| ||||| |||||||| Sbjct 1493 GGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 84.2 bits (92), Expect = 6e-12 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41942 GGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCAT 42001 || || |||||||| || ||||||||||| ||| || || || || ||| | || Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 42002 TTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACC 42061 ||||| | ||||| ||||| || | ||||||||||| |||| | || | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 42062 ATGGCTTTCAACTTGAATGGTTTC 42085 ||||| |||||||| || |||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146196795694856