Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq5054 441 2e-119 >seq5054 Length=5139 Score = 441 bits (488), Expect = 2e-119 Identities = 530/718 (74%), Gaps = 2/718 (0%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| ||| | ||||| ||| | |||||| | || | || ||||| Sbjct 827 TGGGCTCGTTTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 886 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTT-ATTGTCGCTTTCAT 42398 ||||| | |||||||| ||||| || |||| || | | || || || |||||||||| Sbjct 887 GGTGTAATCATGATTCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCAT 945 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||| || || |||||||| ||||| || |||||||| || || || |||||||| || Sbjct 946 CGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTA 1005 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || |||||||| || || ||||| || || || | |||||| || || || || || Sbjct 1006 CGGTAACAACATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTT 1065 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | | ||||||||| | || || || || ||||| || Sbjct 1066 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCA 1125 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || |||| | |||||||||| | ||| | | || ||| |||| || ||||||||| | Sbjct 1126 ACTAATCGTTTGCCACTTCCTTTTAGGTGTATGCTGCTACATGGGTCGTGAATGGGAATT 1185 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 |||| ||| | || ||| | || |||||| |||||||||||| || || || ||||| Sbjct 1186 ATCGTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGC 1245 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || | || || ||| | || || ||| | || |||||||| || ||||| || ||||| Sbjct 1246 TGCTTCAGCTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCC 1305 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 | || ||||| ||||| || ||||||||| | || ||||| ||||| || ||||| || Sbjct 1306 ATTAGGTATTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCT 1365 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| ||| | |||||||| || ||||||||||| || || ||||| || Sbjct 1366 TATGCACCCGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGC 1425 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||| ||| | || || || ||| | | |||||||| |||||||||||| Sbjct 1426 TATGCACGGTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTAC 1485 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 ||| || ||| ||||||||||| || |||||||| |||||||| || || ||| Sbjct 1486 AAACGCAGGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 96.9 bits (106), Expect = 1e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCAC 43056 ||||||||||| || || ||||||||||| || || || || || ||| || || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| | || |||||||| || | || |||||||||||| || | || | ||| Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 43117 ATGGCGTTTAACTTGAATGGTTT 43139 ||||| || ||||| || ||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTT 3771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143515518561172