Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq5054 316 6e-82 >seq5054 Length=5139 Score = 316 bits (350), Expect = 6e-82 Identities = 500/710 (70%), Gaps = 6/710 (1%) Strand=Plus/Minus Query 26153 TGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGT 26212 || ||||| ||||| || || |||||||| ||||| || || || || || ||| Sbjct 1542 TGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTT-TGT 1484 Query 26213 -GAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGC 26271 || | | || || ||||| || | || |||||||| || ||||||||||| Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 26272 AGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAG 26331 || ||| | | ||||| || || ||||||||||| ||| ||||| |||||||| || Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 26332 TATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGG 26391 || || || || ||||||||||||| ||| |||||||| ||||| || ||||| | || Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 26392 CATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGC 26451 ||| || || || ||||| |||| || ||||||||||| || || ||| || Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 26452 GGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAG 26511 | || ||| |||| || |||||| |||||||| | ||| |||| | | | |||| Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATAA 1184 Query 26512 TTCCCACTGTCTCCCTGCATAT-GCTGC-TACTCCTATTAAGAAGTGGAAGATAATGAGT 26569 |||||| | | || ||| | || || ||| |||| | ||||||| | | || ||| Sbjct 1183 TTCCCATTCACGACC--CATGTAGCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGT 1126 Query 26570 TGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAA 26629 || || || || || || |||| ||| ||||| | | |||||||||| || ||||| Sbjct 1125 TGGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAG 1066 Query 26630 AAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCG 26689 || || || ||||| |||||||| | || || || || ||||| || || ||||| ||| Sbjct 1065 AAGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCG 1006 Query 26690 TACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCG 26749 || | | || || |||||||| ||||| || ||||| || ||||| ||||| || ||| Sbjct 1005 TAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCG 946 Query 26750 ATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCG 26809 ||||| || | || || || || || | || | || || ||||| | || ||| Sbjct 945 ATGAAAGCGATGATGAATACTGATGTTGCAGTAAGAAGACATGGAATCATGATTACACCG 886 Query 26810 AACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || | || | |||||| ||||| |||| ||| ||||||| Sbjct 885 AACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCAAGCACAAAA 836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147694215382880