Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq5054 520 1e-142 >seq5054 Length=5139 Score = 520 bits (576), Expect = 1e-142 Identities = 537/700 (77%), Gaps = 2/700 (0%) Strand=Plus/Plus Query 154978 TGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCT 155037 ||| | ||||| |||| ||||| | || |||||||||||||||| | ||||| || Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 155038 TGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGAC 155097 || || || |||| | || ||||| |||| ||||| ||||| || || |||||| Sbjct 905 TGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGAC 964 Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157 || |||||||| |||||||| || | |||||| | | || ||||||||||| || || Sbjct 965 ATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTCA 1024 Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217 ||||||||||| || | ||| ||||| || ||||| |||||||| || ||||||||||| Sbjct 1025 GGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGCT 1084 Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 || || | || || ||||| || || |||||||||| |||||| | || | ||||||| Sbjct 1085 GCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTC 1144 Query 155278 CTTATCGGAATCA-CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCAT 155336 ||| | || | | || ||| |||||| | |||||| | || | |||| | || || Sbjct 1145 CTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTAT 1203 Query 155337 GCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCT 155396 |||||| |||||| |||||| ||||| || |||||| ||||||| | ||||||||| | Sbjct 1204 GCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTT 1263 Query 155397 TGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTAC 155456 ||||| || |||| |||||||| ||||| || | ||||| | ||||| || ||||| Sbjct 1264 AGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTAC 1323 Query 155457 TTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACAT 155516 ||||||| ||| |||| |||||||| || ||||| |||||||||||||| |||||||| Sbjct 1324 ATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACAT 1383 Query 155517 GCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGT 155576 | | || || || ||||| || ||||| || | ||||||||||||||||||||||| || Sbjct 1384 GTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGT 1443 Query 155577 GACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTT 155636 || || || ||||||||||||| ||||| | || ||| ||| |||||| || Sbjct 1444 TACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTTT 1503 Query 155637 CGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCAT 155676 ||| ||||||||||| ||||| |||||||| ||||||||| Sbjct 1504 CGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 155677 GGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCAC 155736 || ||||| |||||||| |||||||| || || || ||||||||||| | | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 155737 TTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACG 155796 |||||| | ||||| ||||| || || | || ||| |||||| | ||| | ||||| Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 155797 ATGGCATTCAACCTTAACGGTTTC 155820 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 155819 TCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACA 155878 ||||||||||||| || ||||||||| | ||| || | || ||||| |||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 155879 TTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 155938 | | ||||| ||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 155939 CTCTTGACCTTGCTGCTGCTGAGTCAG 155965 | | ||| | ||| || || | |||| Sbjct 5070 CGTTAGACTTAGCTTCTTCTAACTCAG 5096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584761079448840