Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq5054 412 1e-110 >seq5054 Length=5139 Score = 412 bits (456), Expect = 1e-110 Identities = 520/709 (73%), Gaps = 4/709 (1%) Strand=Plus/Minus Query 40809 TGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGT 40868 || |||||||| ||||| |||||||| |||| ||||| || || || ||| ||| Sbjct 1542 TGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTT-TGT 1484 Query 40869 -GATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGC 40927 ||||| |||| || || || || || | || |||||||| | ||||||||||| Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 40928 AGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAG 40987 || || || | ||||||||| || || ||||| || | ||| ||||| |||||||| || Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 40988 AATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGG 41047 |||||||| || |||||||| || | ||||||||| ||||| || || ||||| || Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 41048 CATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGC 41107 |||||| || ||||| ||||| || |||| ||| |||||||||||||||||| ||| || Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 41108 TGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAG 41167 | | |||||||| ||| || ||| |||||||| | |||||||| | | | || | Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATAA 1184 Query 41168 TTCCCACTGTCTACCAGCGTATGCTGC-TACTCCTATTAAAAAGTGAAAGACAATGAGTT 41226 |||||| | | ||| ||| || || ||| |||| | ||||| | || || |||| Sbjct 1183 TTCCCATTCACGACCCATGTA-GCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGTT 1125 Query 41227 GATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGA 41286 | || || || ||||| |||| ||| ||||| | | | |||||||| |||||||||| Sbjct 1124 GGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGA 1065 Query 41287 AATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGT 41346 | || || ||||| |||||||| | || || ||||| || || ||||| ||||| |||| Sbjct 1064 AGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCGT 1005 Query 41347 ACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGA 41406 | | | || || ||||| || ||||| || ||||| || ||||| ||||| || |||| Sbjct 1004 AAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGA 945 Query 41407 TAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAA 41466 | || ||||| ||||| || || ||||| || | ||||||||| | ||||| | Sbjct 944 TGAAAGCGATGATGAATACTGATGTTGCAGTAAGAAGACATGGAATCATGATTACACCGA 885 Query 41467 ACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||||| | ||||| ||||| || || ||| | ||| |||||| Sbjct 884 ACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCAAGCACAAAA 836 Score = 102 bits (112), Expect = 2e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 40520 TGACTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTC 40579 ||| | || |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 5095 TGAGTTAGAAGAAGCTAAGTCTAACGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTC 5036 Query 40580 CATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGC 40639 |||||||| | | ||| | | || |||||||| | || ||| | | Sbjct 5035 CATACCTAAGTTAGCACGGTTGATGATGTCCGCCCAAGTGTTTAATACACGACCTTGTGA 4976 Query 40640 GTCTACTACTGACTGGTTAAAGTT 40663 |||||||||||| ||||| ||||| Sbjct 4975 GTCTACTACTGATTGGTTGAAGTT 4952 Score = 96.9 bits (106), Expect = 1e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40665 AAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATA 40724 ||||| || | ||| || |||||||| |||| ||| | | || | ||| || || || Sbjct 3771 AAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAACCAAATACCGATT 3712 Query 40725 ACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGA 40784 ||||| ||||| | | |||||||||| | ||| |||||||||||||| ||||| Sbjct 3711 ACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATTGG 3652 Query 40785 AATATTAGTCTACCAAAGTAACC 40807 || ||||| | |||||||||||| Sbjct 3651 AAGATTAGACGACCAAAGTAACC 3629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143685098141226