Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq5054 538 4e-148 >seq5054 Length=5139 Score = 538 bits (596), Expect = 4e-148 Identities = 543/701 (77%), Gaps = 4/701 (1%) Strand=Plus/Minus Query 67637 ATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTG 67696 ||||||||| |||||||||||||||||||||||||| ||||| |||||| ||| || Sbjct 1543 ATGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTT-TG 1485 Query 67697 T-GACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAG 67755 | || || | ||||| ||||| | ||| | ||| |||||||| | ||||||||||||| Sbjct 1484 TAGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAG 1425 Query 67756 CACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAA 67815 || || | ||||||||| |||||||| || || || | ||| ||||| |||||||||| Sbjct 1424 CAGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAA 1365 Query 67816 GGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAG 67875 ||||||||||||| |||||||| |||| |||| ||||||| ||||| |||||||| | | Sbjct 1364 GGATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATG 1305 Query 67876 GCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTG 67935 |||| |||| ||||| |||||||| |||| || || || ||||| ||||| | || | Sbjct 1304 GCATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAG 1245 Query 67936 CAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAA 67995 ||| |||||||| ||||| || ||| |||||| ||||||||||| | |||| | || | Sbjct 1244 CAGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATA 1185 Query 67996 GTTCCCACTGACGACCACAGTATGCTG-TGATTCCGATAAGGAAGTGGAAGACTACAAGT 68054 |||||| | |||||| ||| || | | || | |||||||||| | || | ||| Sbjct 1184 ATTCCCATTCACGACCCATGTA-GCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGT 1126 Query 68055 TGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAG 68114 ||| |||| ||||| ||||| ||||| || |||| || || |||||||| || || ||| Sbjct 1125 TGGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAG 1066 Query 68115 AAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCG 68174 |||||||||||||| ||||| ||| | || ||||||||||| ||||| |||||||||||| Sbjct 1065 AAGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCG 1006 Query 68175 TACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCA 68234 || | || ||||||| ||| ||||| | |||||||||||| || ||||| || || || Sbjct 1005 TAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCG 946 Query 68235 ATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCG 68294 ||||| || |||||||| | || ||| | || | || |||||||| | |||||| Sbjct 945 ATGAAAGCGATGATGAATACTGATGTTGCAGTAAGAAGACATGGAATCATGATTACACCG 886 Query 68295 AACCAACCAACATAGATGCGATTGTCAACTGAGGTGACCCA 68335 |||||||| | || | || || ||| ||| || | ||| Sbjct 885 AACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCA 845 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 67493 GAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGAC 67552 ||||||||| | |||||||||||||||||| | ||| | ||||||||||| || | || Sbjct 3772 GAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAACCAAATACCGAT 3713 Query 67553 CACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTG 67612 || || | ||||| | ||||||||| | | ||||||||||| || || || || Sbjct 3712 TACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATTG 3653 Query 67613 GAAGATCAAGCGACCGAAGTATCC 67636 |||||| | ||||| ||||| || Sbjct 3652 GAAGATTAGACGACCAAAGTAACC 3629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 67355 AGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCC 67414 || || ||| | ||| | ||||||||||||||||||||||||||||| |||||||| || Sbjct 5089 AGAAGAAGCTAAGTCTAACGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACC 5030 Query 67415 -AAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAA 67473 |||| || | ||| | |||||| |||||||| | || ||| || ||| | Sbjct 5029 TAAGT-TAGCACGGTTGATGATGTCCGCCCAAGTGTTTAATACACGACCTTGTGAGTCTA 4971 Query 67474 CGACGGATTGGTTGAAGTTGA 67494 | || |||||||||||||||| Sbjct 4970 CTACTGATTGGTTGAAGTTGA 4950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566875346529240