Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq5054 526 2e-144 seq4579 241 1e-58 seq7814 104 3e-17 >seq5054 Length=5139 Score = 526 bits (582), Expect = 2e-144 Identities = 543/704 (77%), Gaps = 10/704 (1%) Strand=Plus/Minus Query 68118 ATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTG 68177 ||| ||||| |||||||||||||||||||||||||||||||| |||||| ||| Sbjct 1543 ATGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTTTGT 1484 Query 68178 GGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGC 68237 || || ||||||| |||||||| | | || |||||||| | ||||| ||||| || Sbjct 1483 AGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGC 1424 Query 68238 ACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAG 68297 | ||| | || ||||||||||| |||||||| || | ||| ||||| |||||||| || Sbjct 1423 AGAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAG 1364 Query 68298 GATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGG 68357 |||||||||||| |||||||| || | |||| |||| || ||||| ||||| || | || Sbjct 1363 GATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGG 1304 Query 68358 CATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGC 68417 ||| |||| ||||| |||||||| |||| || || || | ||| || || || || || Sbjct 1303 CATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGC 1244 Query 68418 TGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAG 68477 || || || || ||||| |||||| |||||| ||||||||||| | ||| | || | Sbjct 1243 AGCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATAA 1184 Query 68478 TTCCCATTCACGTCCCATGTATGCAA-AGATACCAATCAGGAAGTG---AAAGATTACGA 68533 |||||||||||| |||||||| ||| | | ||| | |||||||| || ||||| Sbjct 1183 TTCCCATTCACGACCCATGTA-GCAGCATACACCTAAAAGGAAGTGGCAAACGATTA--- 1128 Query 68534 GTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGAT 68593 ||||| |||||||||| || || ||||| || || | | || ||||||||||| || | Sbjct 1127 GTTGGTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGT 1068 Query 68594 AAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTAC 68653 | ||||||||||| || || || ||| | || ||||||||||| ||||| |||||||||| Sbjct 1067 AGAAGTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTAC 1008 Query 68654 CATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAG 68713 | || ||||| ||||| | ||| |||||||| |||||||||||||| || || ||||||| Sbjct 1007 CGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAG 948 Query 68714 CGATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACG 68772 ||||||| |||| |||||| || |||| |||| | ||| || || ||||| | || Sbjct 947 CGATGAAAGCGATGATGAATACTGATG-TTGCAGTAAGAAGACATGGAATCATGATTACA 889 Query 68773 CCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCA 68816 ||||||||||| | ||| | ||||| || || ||||| | ||| Sbjct 888 CCGAACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCA 845 Score = 123 bits (136), Expect = 3e-23 Identities = 116/145 (80%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 67974 GAAACCATTCAGGTTGAATGCCATGGT-GCTAACACCAAGTGCAGTGAACCAGATACCAA 68032 |||||| || | |||||||||||| || | ||| ||| | ||||||||||| ||||| | Sbjct 3772 GAAACCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGAACCAAATACCGA 3714 Query 68033 CGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACT 68092 || ||||| ||||| | ||||||||| | ||||| ||||||||||| || || || | Sbjct 3713 TTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATT 3654 Query 68093 GGAAGATCAGACGACCGAAGTATCC 68117 ||||||| |||||||| ||||| || Sbjct 3653 GGAAGATTAGACGACCAAAGTAACC 3629 >seq4579 Length=6132 Score = 241 bits (266), Expect = 1e-58 Identities = 361/512 (71%), Gaps = 8/512 (2%) Strand=Plus/Plus Query 67099 GAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGAC 67158 ||| ||| || |||||||||| || || || |||||| || ||||||| ||||||| Sbjct 3607 GAATGAAACGGAAGATTGCTGCAACACCAAAGCTTGGAGCAAAGAACCAACCTGATTGAC 3666 Query 67159 CCAGAGGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAG 67218 | | || || || || || ||| | |||||||| || ||| | ||||| ||||||| Sbjct 3667 CTAATGGATAAATTAGGAAAACAGAAGTGAAAACAGCAATTGGAGCTGAGAAAGCAATAG 3726 Query 67219 CATTGTAGGGACGGA----TACCGATGAGACGTGCCAGTTCAAACTGGCGAAGCATGAAA 67274 | || || ||||| | ||| || ||| || | ||||||||| |||||||||||| Sbjct 3727 CGTTATATGGACGTAGGTTTACTGA----ACGAGCAATTTCAAACTGACGAAGCATGAAA 3782 Query 67275 CCAATTAGAGCGAAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATC 67334 ||||||| | | || || ||||| | || | ||| ||| | || ||||| || | Sbjct 3783 CCAATTAAACCAAATGCACCGTGTAATGCAATAAATGCCCATAAACCACCAAGCTGACAC 3842 Query 67335 CAGCGGACGAAATCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATA 67394 || || |||||| || |||| ||||||||||||| | |||||||| ||| | | | Sbjct 3843 CAACGTGTGAAATCACCTTGAGCTTCAGGACCCCAAACAAATAGAAGAGAGTGAGCTAAA 3902 Query 67395 GCATCAGCAGGCGTTGACACAGCCGCTGTGAGAAAATTAGCACCCTCAAGATAACTAGAC 67454 | || || ||||| || || || || | || ||| ||| || | ||| || Sbjct 3903 CTGTTAGGTGGTGTTGAAACCGCTGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTA 3962 Query 67455 GCGAGTCCGTGAGTGTACCAGCTTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATT 67514 || | || ||||| ||||| ||| ||||| || |||||||||| ||||||||| | | Sbjct 3963 GCTAAACCATGAGTATACCATGATGTAACAAAAGTTGTACCAGTAAACCAGCCACCTAGT 4022 Query 67515 GCCATATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCT 67574 || | ||||||| || ||||| | || || |||||||| || || || || || ||| Sbjct 4023 GCAAAATAAGCACAAGGGAAAAGTAATAAACCTGACCAACCTACGAATACGAAACGGTCT 4082 Query 67575 CGTTTAAGCCAGTCATCAAGGACATCGAACCA 67606 | ||||||||||||| |||| ||||| Sbjct 4083 TGACGAAGCCAGTCATCAGCATCATCAAACCA 4114 Score = 215 bits (238), Expect = 6e-51 Identities = 239/319 (75%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 |||| || || |||||||| || | |||||||| ||||| ||||| |||||| |||| Sbjct 408 ATTATAGAGCGTTACCACGAGGTAATACTTCTTCAGGGAAAACAAAACCTTCATGTGGTT 467 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 | || | |||| ||| ||||||| ||||||||| |||| || ||| || ||||||| Sbjct 468 GGTCTTGAACAGCCATCCAAGCACGAATACCTTCATTTAATAAAAGGTTTTTCGTGTAGA 527 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | || || || || |||||||| || || | |||||||| || || ||||||||||||| Sbjct 528 AAGTTTCAAATTCAGGGTCTTCAGCAGCACGAATCTCTTGAGAAACGAAGTCATAAGCAC 587 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | | ||| | || | ||| | |||||| || | | |||| ||||| ||||||||| Sbjct 588 GTAAGTTTACTGCTAAACCTACAATACCAATAGCAGACATCCATAGACCTGTAACAGGAA 647 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 | || ||||| ||||| || | ||| | || || || || | ||||||||| || | Sbjct 648 CTAATAACATGAAGAAGTGAAGCCAACGTTTGTTTGAGAAAGCTACACCAAAGATTTGTG 707 Query 66886 ACCAGAAGCGGTTTGCAGT 66904 ||||||| ||||||||||| Sbjct 708 ACCAGAAACGGTTTGCAGT 726 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 66906 ACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGT 66965 ||||| || || |||||||| | || |||| || |||||| ||||||||| || Sbjct 1946 ACCATAGAATATGTTTCTTCAGCCTGTGTAGGGTTGAATGCACGGAAAGTGTTAGCACCA 2005 Query 66966 TCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCA 67025 |||||||||||| | | || || ||||| ||| |||| ||||| ||| | | || ||| Sbjct 2006 TCACCATCTTCAAATAATGTGTTTTCTACAGTAGCACCGTGAATAGCACATAATAAAGCA 2065 Query 67026 CCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAAT 67085 |||| | | ||| || ||||||||||| || || ||||| || ||||||||||| || Sbjct 2066 GCACCTAAAACACCAGCAACACCCATCATGTGGAATGGGTTTAAAGTCCAGTTATGAAAA 2125 Query 67086 CCTTG 67090 ||||| Sbjct 2126 CCTTG 2130 >seq7814 Length=1945 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 35510 ACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCT 35569 ||||||||||||||| ||||||||||||||||||| ||||||| |||| ||||| || || Sbjct 241 ACTCCCCAGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGATCGCTCTACCACT 182 Query 35570 GAGCTACTGAGGATT 35584 |||||||||| |||| Sbjct 181 GAGCTACTGAAGATT 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571981899255480