Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq5054 542 3e-149 seq4579 262 4e-65 >seq5054 Length=5139 Score = 542 bits (600), Expect = 3e-149 Identities = 546/702 (78%), Gaps = 6/702 (1%) Strand=Plus/Plus Query 157589 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 157648 ||| | ||||| || | ||||| | || ||||||||||||| ||| | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 157649 ACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 157707 ||| | | |||| |||| || |||||| |||| ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 157708 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 157767 |||||| || ||||||||||| || | ||||| || | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 157768 TGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 157827 ||||| ||||||||| |||| ||||| || |||||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 157828 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTT 157887 || || | || || ||| | |||||||||||||||| |||||| | || | ||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 157888 CCTCATTGGTATCT-ATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTA 157946 ||| | ||| | | ||| |||||||| ||||| |||||| | || | ||||||||||| Sbjct 1144 CCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTA 1202 Query 157947 TGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCC 158006 |||| || |||||| ||| || || || |||||||| ||||| || || ||||||||| Sbjct 1203 TGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCT 1262 Query 158007 TCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTA 158066 | || || || |||| |||||||| ||||| || | |||||| | ||||| || |||| Sbjct 1263 TAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTA 1322 Query 158067 CTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATA 158126 | ||||||| |||| | ||||||||||| || |||||||||||||||||||||||||| | Sbjct 1323 CATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACA 1382 Query 158127 TGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCG 158186 || | ||||||||||| ||||| ||||| || | ||||||||||||||||| | | Sbjct 1383 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAG 1442 Query 158187 TTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTC-ACAGAACTACGGTTACAAG 158245 ||||||| || | | |||||||| ||||||| || || ||| ||| |||||| Sbjct 1443 TTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCGT 1501 Query 158246 TTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACAT 158287 ||||||||||| |||||||| || ||||| || || || ||| Sbjct 1502 TTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 143 bits (158), Expect = 3e-29 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 158288 GGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 158347 || ||||| |||||| | ||||||||||||||||||||||||||||| ||||| || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 158348 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 158407 |||||| | ||||| ||||| || |||| || |||||||| || | || | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 158408 ATGGCATTCAACCTGAACGGTTTC 158431 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 158430 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 158489 ||||||||||||| || | | || || |||||||| || ||||| ||||| || Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 158490 TACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 158549 | | ||||| ||| | ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 158550 CACTCGACCTTGCTGCTGCTGAGTCAACT 158578 | | ||| | ||| || || | ||| || Sbjct 5070 CGTTAGACTTAGCTTCTTCTAACTCAGCT 5098 >seq4579 Length=6132 Score = 262 bits (290), Expect = 4e-65 Identities = 351/486 (72%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 |||||||||||| | ||| || || || || || || ||||| || || ||||| | Sbjct 4099 GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTTTTC 4040 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||||||| | || | || || ||| ||||||| ||| |||||||||| ||| Sbjct 4039 CCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACTTTTGTTACATCATGG 3980 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || || || ||| | |||| ||| || | || ||| |||||| | || ||||| || Sbjct 3979 TATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCAGCGGTT 3920 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || || || || | | | ||| |||||||| | ||||||||||||| |||| Sbjct 3919 TCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGGGGTCCTGAAGCTCAA 3860 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 || ||||| || ||||| || ||||| || |||||| ||| | ||| | |||||| Sbjct 3859 GGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTTATTGCATTACACGGT 3800 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTA-- 159663 || || | |||||||||||||||| |||||||||||| | || ||| ||| ||| Sbjct 3799 GCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGT-TCA---GTAAA 3744 Query 159664 --TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 159721 | ||||| || || |||||||| ||||| | ||| ||||||||||| || || Sbjct 3743 CCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTTCACTTCTGTTTT 3684 Query 159722 CCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 159781 ||| || || ||||| ||||| || ||||||| || ||||| |||||| || ||||| Sbjct 3683 CCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTTTGGTGTTGCAGC 3624 Query 159782 AATCTT 159787 |||||| Sbjct 3623 AATCTT 3618 Score = 219 bits (242), Expect = 5e-52 Identities = 240/319 (75%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 159993 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTT 160052 ||||||||||| |||||||| || ||||| ||| | || || || ||||| || |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 160053 CATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATT 160112 || ||||||||||| || || ||||||| ||||| |||| || ||||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 160113 GGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAA 160172 || | || | || | |||||||| || ||||| ||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 160173 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCA 160232 || || |||||||| || |||||||| |||||| | |||| || ||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 160233 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCT 160292 ||| |||| | || ||||| |||||| ||| | ||||| ||||||||||| ||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 160293 AGAGGCAACGCCCTTTAAT 160311 | || ||||| || |||| Sbjct 426 CGTGGTAACGCTCTATAAT 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548304900399480