Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq5054 560 1e-154 seq4579 259 5e-64 seq1355 89.7 6e-13 >seq5054 Length=5139 Score = 560 bits (620), Expect = 1e-154 Identities = 553/710 (78%), Gaps = 6/710 (1%) Strand=Plus/Plus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 ||||||| ||| |||| || ||| | |||||| | || |||||||||||||||| | Sbjct 836 TTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 895 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTG-CTTCATCGTGGCATTCATCGCTGCTCC 150957 ||||||||| ||| | | |||| ||| | |||||| | || |||||||||||||| Sbjct 896 ATGATTCCATGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTCC 954 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 || || ||||||||||| ||||||||||| ||| | |||||||| | ||||||||||| Sbjct 955 GCCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAA 1014 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 ||| || || ||||||||||| || ||||||||||||||||||| |||||||| || || Sbjct 1015 CATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAAT 1074 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 |||||||| || ||| | || |||||| | || ||||||||||||| |||||| | || Sbjct 1075 TTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGT 1134 Query 151138 CTTCCACTTCCTGATTGGTATCTATGCT--TACATGGGTCGTGAGTGGGAACTGTCTTAC 151195 | ||||||||| | || | |||||| |||||||||||||| |||||| | || | | Sbjct 1135 TTGCCACTTCCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTC 1192 Query 151196 CGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCGAGT 151255 || || ||||||||||| |||||| ||||| ||||| |||||||| |||||||| Sbjct 1193 CGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCA 1252 Query 151256 GCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGT 151315 || || ||| | || || || |||| |||||||| ||||| || | ||||| | ||| Sbjct 1253 GCTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGT 1312 Query 151316 ATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAC 151375 ||||| || ||||| |||| |||| | || |||||||| ||||||||||| || |||||| Sbjct 1313 ATTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCAC 1372 Query 151376 CCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCAC 151435 || ||||| ||| | ||||| |||||||| || ||||| || | ||||| || |||||| Sbjct 1373 CCGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCAC 1432 Query 151436 GGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTAT 151495 ||||| | |||||||| || | | ||||| || || |||||||| || ||| Sbjct 1433 GGTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCA 1492 Query 151496 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACA 151545 |||||| |||||||||||||||||||| |||||||| || || || || Sbjct 1493 GGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 143 bits (158), Expect = 3e-29 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151547 GGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCAC 151606 ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 151607 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACC 151666 |||||| | || || ||||| || ||||||| ||||||||||| | ||| | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 151667 ATGGCATTCAACCTGAACGGTTTC 151690 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 >seq4579 Length=6132 Score = 259 bits (286), Expect = 5e-64 Identities = 367/513 (72%), Gaps = 10/513 (2%) Strand=Plus/Minus Query 152356 TGGTTTGATG-TCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTC 152414 |||||||||| | ||| ||||||||||| |||||||||||| || || |||||||| Sbjct 4114 TGGTTTGATGATGCTG-ATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 152415 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTAC 152474 || | | ||||| || ||||||| |||| | || || ||| ||||||| || || Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 152475 TTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTT 152534 ||| | || ||||||||||| || || || | ||| || | || || ||||| Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 152535 TCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTG 152594 | ||||| || ||||| || ||| | | | | | ||| |||||||| || | || Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 152595 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTT 152654 ||||||||| |||||||| |||||| | ||| |||||| || || | ||||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 152655 TGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGC 152714 | | || | ||||| || || | | |||| |||||||||||||| ||||||||| | || Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 152715 ACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 152770 ||| || ||| | ||||| || || |||||||| ||||| | ||| || |||| Sbjct 3755 TCGT----TCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTG 3700 Query 152771 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 152830 |||| | || || || || || || | |||||||| ||||||| || |||||| Sbjct 3699 TTTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAA 3640 Query 152831 CTTTCGGGGTCGCAGCAATCTTCCGATTCCTTC 152863 || || || |||||||||||||| ||| ||| Sbjct 3639 GCTTTGGTGTTGCAGCAATCTTCCGTTTCATTC 3607 Score = 208 bits (230), Expect = 8e-49 Identities = 237/317 (75%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 153058 ACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTT 153117 ||||| |||||||||||||| || || ||||| | ||||| || ||||| |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 153118 CATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATT 153177 || ||||| ||| | || || ||||||| ||||| |||| ||| ||||||| || | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 153178 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAA 153237 ||| | || | || | |||||||| || || || |||||||| || | || | ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 153238 GATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCT 153297 || ||||||||||| || ||||| ||||| || | | || || |||||| |||||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 153298 TGGTTGGCACCTGTT---GACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTG 153354 ||| |||| |||| |||||||| ||||| || || ||||||||||| ||||| Sbjct 486 TGGATGGC---TGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTA 430 Query 153355 CCACGAGGCAACGCTCT 153371 || || || |||||||| Sbjct 429 CCTCGTGGTAACGCTCT 413 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 152872 CAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTG 152931 ||||| || || |||||||| || || || || || |||||||||||||| ||| |||| Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 152932 GGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGAT 152991 || | || || | | ||| ||||| |||| ||| ||||| || || || | | ||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGAT 2011 Query 152992 GGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCG 153051 ||||| || ||||||||| || ||| || || || | ||||| || ||||| Sbjct 2010 GGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATTCT 1951 Query 153052 ATGGT 153056 ||||| Sbjct 1950 ATGGT 1946 >seq1355 Length=24484 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 152045 CTACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGT 152104 ||||||||| || |||||||| || ||| || || || ||| | | | || || || Sbjct 14243 CTACTCTTGCCGCGCTGGTGCTTGCTCCAGCTGCGCCGGCAAGGTCGAGGCCGGCACCGT 14184 Query 152105 TGATCAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGAC 152164 || ||| ||||| || ||| ||||||| |||||| | || ||||||||||| Sbjct 14183 CGACCAGTCCGACCAGTCCTTCCTGGATGAGACCCAGATGGGCAACGGCTTCGTGCTGAC 14124 Query 152165 CTGTGTTGCATATCCAACTTCTGATGTCACCCTCATGACTGAACAAGAGGAGTCGCTCTA 152224 ||| || || || || || || || |||||| ||| ||| | || |||||| | || || Sbjct 14123 CTGCGTGGCCTACCCCACCTCGGACGTCACCATCAAGACCCACCAGGAGGAGGCCCTGTA 14064 Query 152225 CT 152226 || Sbjct 14063 CT 14062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549552742231080