Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq5054 509 2e-139 seq4579 214 2e-50 >seq5054 Length=5139 Score = 509 bits (564), Expect = 2e-139 Identities = 542/710 (76%), Gaps = 4/710 (1%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 ||||||| ||| | || || ||||| || || | ||| | |||||||| ||||| | Sbjct 836 TTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 895 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 ||||| ||||||||||| ||||| | | ||||| | || |||||||||||||| Sbjct 896 ATGATTCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 955 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 72413 ||||| || ||||| || ||| | ||||||||| | |||||| ||||| || |||||||| Sbjct 956 CCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTT-TACGGTAACAA 1014 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 ||| || || |||||||| || ||| |||| ||||| || || | |||||||| || || Sbjct 1015 CATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAAT 1074 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 |||||||| || || | ||||| ||||| |||||||| ||||||||||| || | | Sbjct 1075 TTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGT 1134 Query 72534 TTTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATCATACA 72592 || |||||||||| | || | | ||| |||||||||| | | |||||| |||| | | Sbjct 1135 TTGCCACTTCCTTTTAGGTGTATGCTG-CTACATGGGTCGTGAATGGGAATTATCGTTCC 1193 Query 72593 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 72652 | |||| ||| | || ||||| ||| || |||||||| || ||| |||| || | | Sbjct 1194 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAG 1253 Query 72653 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 72712 | |||||| | || || ||| |||| || ||||||||||| || ||||||||| |||||| Sbjct 1254 CTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTA 1313 Query 72713 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 72772 | |||||||| || ||||||||| |||| |||||||| || |||||||| || ||||||| Sbjct 1314 TTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 1373 Query 72773 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 72832 | ||||| ||| |||||| || ||| | || |||||| | ||| ||| ||||||| Sbjct 1374 CGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACG 1433 Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892 ||||| | |||||||||||| ||||| | || ||||| || ||||| | |||| | Sbjct 1434 GTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAG 1493 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCAT 72942 | || ||||| ||||||||||| || || |||||||| ||||||||| Sbjct 1494 GTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 72943 GGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACAC 73002 || ||||| ||| | |||||||||| || || ||||||||||||||||||||||||||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 73003 TTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACA 73062 |||||| | |||| | || ||| || || | ||||| || | | ||| | | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 73063 ATGGCATTCAACCTTAACGGATTC 73086 |||||||||||| | ||||| ||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 >seq4579 Length=6132 Score = 214 bits (236), Expect = 2e-50 Identities = 349/503 (69%), Gaps = 0/503 (0%) Strand=Plus/Minus Query 73360 ATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 73419 ||||||||| | | |||||| ||| | ||| |||||||||||| | || ||||| Sbjct 4115 ATGGTTTGATGATGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 73420 TGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 73479 ||| | |||||||| ||||||||||| | ||| | || || ||||| || || || Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 73480 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTT 73539 ||| || || |||||||| || |||||| | || | || || | || || || || Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 73540 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTG 73599 ||||||||||| || |||||||| | | | | | ||| ||| | || |||| Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 73600 GGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 73659 ||| || || || ||||| ||| | ||| |||| ||| | ||||| ||||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 73660 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC 73719 | | |||||||| || | ||||| | || |||||||||||| | |||||||| ||||| Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 73720 AGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATT 73779 | || ||||||| || ||||| | ||||| ||||| || || || || Sbjct 3755 TCGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTT 3696 Query 73780 CACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATT 73839 ||| | || ||||| ||||| ||||| || |||||||||| || || || Sbjct 3695 CACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTT 3636 Query 73840 CGGTGTCGCAGCAATCTTTCGTT 73862 ||||| ||||||||||| |||| Sbjct 3635 TGGTGTTGCAGCAATCTTCCGTT 3613 Score = 210 bits (232), Expect = 3e-49 Identities = 239/321 (74%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 ||||| ||| | ||||||||||| || |||||| |||| || ||||||||| | | | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 |||||| | ||||| || || ||||| | ||| | |||| || |||| ||||| ||| Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 ||| ||||| | ||| | | || || ||||| || ||||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 ||||| || |||||||| |||||||| || ||| || | | ||||||||||| | || Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| | | || ||||| ||||| ||||| ||||| |||||||| || || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 74384 CGAGGCAACGCACTATAAATA 74404 || || ||||| |||||| || Sbjct 426 CGTGGTAACGCTCTATAATTA 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572800995432120