Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq5054 511 5e-140 seq4579 248 9e-61 >seq5054 Length=5139 Score = 511 bits (566), Expect = 5e-140 Identities = 539/702 (77%), Gaps = 8/702 (1%) Strand=Plus/Plus Query 157060 TGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCA 157119 ||| | ||||| || | |||||||| || | |||||||||||||| | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 157120 ACATTGCTTGCAGCAACTATCTG-CTTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGA 157178 | ||| | ||||| ||| | ||||| | || ||| | || || || || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 157179 TATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTC 157238 ||||| ||||| || ||||||||| | |||||||| | || || |||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 157239 TGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGC 157298 ||||| ||||| || |||| ||||| |||||||||||||||||||| || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 157299 AGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTT 157358 || || | || || ||| | || ||||||||||||| |||||| | || | ||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 157359 CCTGATCGGCATCTATGC--CTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGT 157416 ||| | || | ||||| ||| ||||| ||||| |||||| | || | |||||||||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGT 1201 Query 157417 ATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTC 157476 ||||| || |||||| |||||| ||||| || ||||| |||||||| || |||||| Sbjct 1202 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTC 1261 Query 157477 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGT 157536 | || || || |||| |||||||| ||||| || | |||||| | ||||| || ||| Sbjct 1262 TTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGT 1321 Query 157537 ACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCAC 157596 || ||||||| ||| |||| ||||| || |||||||| || |||||||| ||||||||| Sbjct 1322 ACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCAC 1381 Query 157597 ATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTC 157656 ||| | || |||||||| ||||| ||||| || || ||||||||||||||||| | Sbjct 1382 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTA 1441 Query 157657 GTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTC-ACAGAACTATGGTTACAA 157715 |||||||| || | | |||||||||||||||| || || ||| ||| |||||| Sbjct 1442 GTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCG 1500 Query 157716 GTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACA 157757 |||||||||||||||||||| |||||||| || ||||| || Sbjct 1501 TTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 157759 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCAC 157818 |||||||| ||||| || ||||||||||||||||||||||||||| | | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 157819 TTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 157878 |||||| | || || ||||| || |||| || ||||||||||| | || || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 157879 ATGGCATTCAACCTCAACGGTTTC 157902 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 157901 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 157960 ||||||||||||| || | | || || |||||||| || ||||| ||||| || Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 157961 TCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 158020 || | ||||| ||| | ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 158021 C 158021 | Sbjct 5070 C 5070 >seq4579 Length=6132 Score = 248 bits (274), Expect = 9e-61 Identities = 365/511 (71%), Gaps = 12/511 (2%) Strand=Plus/Minus Query 158771 ATGGTTTGAC-ATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGT 158829 ||||||||| || || || ||||||||| | || |||||||| || || || |||| Sbjct 4115 ATGGTTTGATGATGCT-GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGT 4057 Query 158830 CTGGACTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGA 158889 | || | | ||| | || ||||||| |||| | || || ||| ||||||| || | Sbjct 4056 CAGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAA 3997 Query 158890 CTTTCGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACT 158949 |||| | ||| |||||||| ||||| | |||||||| || | || ||| |||| Sbjct 3996 CTTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACT 3937 Query 158950 TTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCT 159009 | | || ||||| ||||| || ||| || | | | | ||| |||||||| || | | Sbjct 3936 TCTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTT 3877 Query 159010 GGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTC-CAACTTGGGGGACTCTGGAAT 159068 |||||||||| |||||||| |||||| || || ||| || ||||| || | ||| Sbjct 3876 GGGGTCCTGAAGCTCAAGGTGATTTCA-CACGTTGGTGTCAGCTTGGTGGTTTATGGGCA 3818 Query 159069 TTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTG 159128 ||| | || | |||||||| |||| ||||||||||||||||||| ||||||||| | Sbjct 3817 TTTATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATT 3758 Query 159129 GCACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGC 159184 || ||| || ||| | ||||| || || |||||||| ||||| | ||| ||||| Sbjct 3757 GCTCGT----TCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGC 3702 Query 159185 TGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCC 159244 |||||| || ||||| || || ||| | ||||| || ||||||| || ||||| Sbjct 3701 TGTTTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCC 3642 Query 159245 GTCCTTTGGGGTGGCCGCAATATTCAGGTTC 159275 |||||| || || ||||| ||| | ||| Sbjct 3641 AAGCTTTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 205 bits (226), Expect = 1e-47 Identities = 232/311 (75%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 159474 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTT 159533 ||||||||||| |||||||| || ||||| || | || || || ||||| || |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 159534 CATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATT 159593 || ||||| ||||| || || ||||||| |||||||||| || |||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 159594 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAA 159653 ||| | || | || | |||||||| || ||||| ||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 159654 GATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCT 159713 || || ||||||||||| |||||||| || ||| || | | |||||||| | |||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 159714 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCA 159773 ||| |||| | || ||||| |||||| || | ||||| |||||||| |||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 159774 AGAGGTAACGC 159784 | |||||||| Sbjct 426 CGTGGTAACGC 416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 159288 CAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTA 159347 ||||| || || || ||||| ||||||| ||||| |||||||| ||||||||| | || Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 159348 GGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGAT 159407 |||| || | ||| ||||||||| || | || || ||||| ||||||| || ||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGAT 2011 Query 159408 GGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCT 159467 || || || ||||| || || || | | || || | || || || |||||| Sbjct 2010 GGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATTCT 1951 Query 159468 ATGGT 159472 ||||| Sbjct 1950 ATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545204493387120