Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq5054 506 2e-138 seq4579 248 1e-60 >seq5054 Length=5139 Score = 506 bits (560), Expect = 2e-138 Identities = 536/702 (76%), Gaps = 6/702 (1%) Strand=Plus/Plus Query 177567 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 177626 ||| | ||||| || | ||||| | || ||||||||||||| ||| | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 177627 ACTCTGTTGGCAGCAACTATCTG-CTTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGA 177685 ||| | | ||||| ||| | |||||| |||| ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 177686 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 177745 |||||| || ||||||||||| || | ||||| || | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 177746 TGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 177805 ||||| ||||||||| |||| ||||| || |||||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 177806 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTT 177865 || || | || || ||| | |||||||||||||||| |||||| | || | ||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 177866 CCTTATCGGCATCTATGC--ATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGT 177923 |||| | || | ||||| || ||||| ||||| |||||| | || | |||| ||||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGT 1201 Query 177924 ATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTT 177983 ||||| || |||||| |||||| ||||| || || || || || || || || || || Sbjct 1202 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTC 1261 Query 177984 CTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGT 178043 |||| || || |||| |||||||||||||| || | |||||| | ||||| || ||| Sbjct 1262 TTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGT 1321 Query 178044 ACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCAC 178103 || ||||||| |||| | ||||||||||| || ||||| ||||||||||||||||||||| Sbjct 1322 ACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCAC 1381 Query 178104 ATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTC 178163 ||| | ||||||||||| ||||| ||||| || | |||||||||||||| || | Sbjct 1382 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTA 1441 Query 178164 GTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAG 178223 |||||||| || | ||||||| || || |||| || || ||| |||||| Sbjct 1442 GTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGT 1501 Query 178224 TTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCAT 178265 ||||| ||||||||||| || || ||||| || || || ||| Sbjct 1502 TTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 125 bits (138), Expect = 9e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 178266 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCAC 178325 |||||||| |||||| | ||||||||||| || || ||||||||||| |||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 178326 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACC 178385 |||||| | || || ||||| ||| | || || |||||||| || | ||| |||| || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 178386 ATGGCATTTAACCTCAATGGATTC 178409 |||||||| ||| | || || ||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 >seq4579 Length=6132 Score = 248 bits (274), Expect = 1e-60 Identities = 347/486 (71%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 178951 GATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179010 |||||||||||| || || || || || || || |||||||| || | ||||| | Sbjct 4099 GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTTTTC 4040 Query 179011 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGG 179070 || ||||||| |||| | || || ||| ||||||| ||| |||||||||| ||| Sbjct 4039 CCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACTTTTGTTACATCATGG 3980 Query 179071 TACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 179130 || || |||||| | |||| ||| || | |||||| |||||| | || ||||| || Sbjct 3979 TATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCAGCGGTT 3920 Query 179131 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 179190 || || || || | | | | ||| |||||||| | ||||||||||||| |||| Sbjct 3919 TCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGGGGTCCTGAAGCTCAA 3860 Query 179191 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 179250 || ||||| || ||||| || ||||| || ||||| || | || | |||||| Sbjct 3859 GGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTTATTGCATTACACGGT 3800 Query 179251 GCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA-- 179308 || || | ||||||| ||||||||||||||||||||| | || ||| || ||| Sbjct 3799 GCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGT----TCAGTAAA 3744 Query 179309 --TCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | ||||| || || || |||||||| | | ||| ||||| || ||| | ||| || Sbjct 3743 CCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTTCACTTCTGTTTT 3684 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 || || || ||| | || ||||| ||||||||||||| ||| ||||||||||| || Sbjct 3683 CCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTTTGGTGTTGCAGC 3624 Query 179427 GATCTT 179432 ||||| Sbjct 3623 AATCTT 3618 Score = 176 bits (194), Expect = 5e-39 Identities = 231/320 (72%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 179638 ACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTC 179697 || || |||||||| ||||| || ||||| || || | || || || |||||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 179698 CACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATT 179757 |||||||| | | | || |||||||| | ||||| ||| | ||| ||||||| || | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 179758 GGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAA 179817 || |||| | || | ||||||||||| || || ||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 179818 GATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCT 179877 || ||||| || || || ||||| || || ||| || | | |||||||| | |||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 179878 TGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCT 179937 ||| |||| | || |||||||||||| || | ||||| |||||||| ||||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 179938 AGTGGTAACGCACTGTGATT 179957 |||||||||| || | ||| Sbjct 426 CGTGGTAACGCTCTATAATT 407 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 179443 CTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCA 179502 || || || |||||||| || |||||||| | ||||| || ||||||||||| ||||| Sbjct 2139 CTGTTTTTCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCT 2080 Query 179503 GGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTG 179562 ||| | | |||| |||| | | | ||||||||| || | |||||||| || ||||| Sbjct 2079 GGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTA 2020 Query 179563 TATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAG 179622 | ||||||||| || || ||||| || || ||| || |||| || | || || Sbjct 2019 TTTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAA 1960 Query 179623 ACCTATTCTATGGT 179636 || ||||||||||| Sbjct 1959 ACATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605590439253240