Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3145 122 8e-23 seq1311 114 1e-20 seq601 87.8 2e-12 >seq3145 Length=10667 Score = 122 bits (134), Expect = 8e-23 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 120633 GTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCT 120692 |||| |||||| || ||||| ||||||||||||||||||||||| || ||||||||| Sbjct 292 GTAGAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGA 233 Query 120693 AAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCC 120752 || || ||||||||||||| ||| | |||||| |||| |||| | || ||| Sbjct 232 GAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCC 173 Query 120753 CGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGG 120799 ||| ||||| | ||||||||| | ||||| |||| ||||||| Sbjct 172 CGAGAAGAAGATGCCCTCCACCGCCGAGAAGGCCACCAGACGCTCGG 126 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 120393 CTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTG 120452 || || ||| || ||| ||| || ||||| |||||| || |||| ||| || || Sbjct 864 CTGCAGCGAGATCATGTCCATGAAGTCGAAGGGGTTGGTCACGTTGTAGTGCTTGGGGCA 805 Query 120453 GCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGC 120512 ||||| | || ||||| |||||||| ||||||||||||||| | ||| | |||| Sbjct 804 GCCCAGCGCCACCAGCAGGCGGTCCGCCACAAACTCAATGTACGTCCGCATCAGCCGCGC 745 Query 120513 GTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCCT 120559 ||||||||| | || ||||||||||||| |||| | ||||||| Sbjct 744 GTTCATGCCGATCAGGTCCACCGGCAACGCGTCCGTGCAGAACTCCT 698 >seq1311 Length=25178 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 148861 CGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTT 148920 || |||||||||||||||||| |||||| ||| ||| ||||| ||||| ||||| | Sbjct 7395 CGGTGTACTCTACGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCT 7336 Query 148921 GATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCT 148980 | ||| |||||||||||| ||||||||||||||||||||||| || || || |||| Sbjct 7335 GGTTGGACTTGCTGTTGCAGGCGTCCTTGTACAGCATGTACGGGTTACCGGTCTCGACCT 7276 Query 148981 G 148981 | Sbjct 7275 G 7275 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/131 (76%), Gaps = 6/131 (5%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 |||||||| ||||||||||| |||||||||||| ||||||| |||||| ||||| |||| Sbjct 9828 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAC 9769 Query 148011 GACATGAGCGT---GTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | ||||| | | | | |||| |||| || | || ||||||||| |||||| Sbjct 9768 G---TGAGCTTGCCGAAGTTGGGGTCGGGCATGAAGACGTTGAACGACTGGGACTGGTCG 9712 Query 148068 ATGAACGCGCC 148078 ||| | ||||| Sbjct 9711 ATGTAGGCGCC 9701 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 149150 CTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGCAGTCTT 149208 || ||| ||||| ||||| | ||| || |||| | |||||||| || | || || | Sbjct 6350 CTCCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCGCGGGCACGCGCC-TCCT 6292 Query 149209 CGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAA 149268 | ||| ||| |||||||| || | | || | |||||||||||| ||||| | Sbjct 6291 CCTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCCGCGTGCCAGGGCTCCA 6232 Query 149269 TGTACACCGCGAGCGCGCCCTTGCGCTTGCCGCC 149302 |||| | |||| ||||||||||||||||||||| Sbjct 6231 TGTAGATGGCGAACGCGCCCTTGCGCTTGCCGCC 6198 Score = 82.4 bits (90), Expect = 7e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 148328 CTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGA 148387 |||||||||||||| ||||||| ||||| || ||||||||| ||| ||||||||||| Sbjct 8987 CTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCGGTGGGCATGGGCGCCACCAGCAGCGA 8928 Query 148388 GTTGCGCA 148395 |||||||| Sbjct 8927 GTTGCGCA 8920 >seq601 Length=42509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| ||||| || ||||| || ||| |||| | |||||| ||||| Sbjct 42409 ATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGCCCGTCCTCCAGCTG 42350 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 |||||| ||| | || || ||||||||||| || ||||||||| Sbjct 42349 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCT 42307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483359532456360